{"id":"W2341072307","doi":"10.1111/oik.02700","title":"Niche‐based host extinction increases prevalence of an environmentally acquired pathogen","year":2016,"lang":"en","type":"article","venue":"Oikos","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Future Earth","funders":"Fondation pour la Recherche sur la Biodiversite; Agence Nationale de la Recherche","keywords":"Biology; Host (biology); Extinction (optical mineralogy); Ecology; Niche; Ecosystem; Ecological niche; Pathogen; River ecosystem; Zoology; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000191384,0.00009603449,0.0001494193,0.00006207988,0.00003001291,0.000006232829,0.00009305673,0.0000480633,0.005057707],"category_scores_gemma":[0.0003119628,0.0000639931,0.00006100909,0.00005938826,0.0001005291,0.000137134,0.00003761701,0.00002851139,0.000120397],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006159149,"about_ca_system_score_gemma":0.00007429322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004681574,"about_ca_topic_score_gemma":0.000005858707,"domain_scores_codex":[0.9989896,0.00008300784,0.0001685267,0.0002236019,0.00033167,0.0002036164],"domain_scores_gemma":[0.9991415,0.0001453789,0.00006601261,0.0003774314,0.00003526805,0.0002344755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003871337,0.0003980393,0.2234818,0.0001348424,0.00001131647,0.00002745839,0.00001200977,7.269444e-8,0.7650073,0.000003356671,0.0001706015,0.01036609],"study_design_scores_gemma":[0.001353263,0.0008447409,0.6211194,0.0001709815,0.00004526831,0.00001290127,0.00001660727,0.00002154083,0.3752907,0.000009123505,0.001042347,0.00007306524],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982683,0.000116288,0.0001065502,0.0002816547,0.00002631858,0.0002849751,0.0001718361,0.00003178369,0.0007122791],"genre_scores_gemma":[0.9982236,0.0002343104,0.0005172082,0.0001861346,0.0000939958,0.00005983589,0.0000321019,0.00001525913,0.0006375387],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3976376,"threshold_uncertainty_score":0.9958518,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01743871342201412,"score_gpt":0.2732611918221375,"score_spread":0.2558224784001234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}