{"id":"W2341072307","doi":"10.1111/oik.02700","title":"Niche‐based host extinction increases prevalence of an environmentally acquired pathogen","year":2016,"lang":"en","type":"article","venue":"Oikos","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Future Earth","funders":"Fondation pour la Recherche sur la Biodiversite; Agence Nationale de la Recherche","keywords":"Biology; Host (biology); Extinction (optical mineralogy); Ecology; Niche; Ecosystem; Ecological niche; Pathogen; River ecosystem; Zoology; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005200137,0.0001945883,0.0002016053,0.0008841113,0.0002771388,0.0005014713,0.000170555,0.0002720825,0.001372545],"category_scores_gemma":[0.001922784,0.0001425491,0.0001945952,0.0006379472,0.0004029718,0.0003841428,0.0005013876,0.0002676001,0.0001013661],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002494403,"about_ca_system_score_gemma":0.0001586306,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004072527,"about_ca_topic_score_gemma":0.007024925,"domain_scores_codex":[0.9995821,0.0001206463,0.00003607067,0.0001248221,0.00004933456,0.0000869846],"domain_scores_gemma":[0.9981794,0.0004104325,0.001033806,0.0001093393,0.0001112823,0.0001557512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003734235,0.000009004391,0.9963291,0.00001642261,0.00002294896,0.00007049886,0.0001483041,0.00006688922,0.001909396,0.00001729907,0.00002799262,0.001344724],"study_design_scores_gemma":[3.792453e-7,0.00001199239,0.9995339,0.000002507797,0.00000300286,0.0001078526,0.0001401367,0.00008192424,0.00007465827,0.00000951528,0.00003342276,6.698307e-7],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995958,0.0000761835,0.00006849715,0.000008012403,9.354016e-7,0.000002396243,0.0001337889,0.00000160516,0.0001127442],"genre_scores_gemma":[0.9997571,0.00003518508,0.0000728075,0.000005256011,0.000001731005,0.000002429026,0.00009190362,4.918201e-7,0.00003302166],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004072527,"threshold_uncertainty_score":0.008097649,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01743871342201412,"score_gpt":0.2732611918221375,"score_spread":0.2558224784001234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}