{"id":"W2341468196","doi":"10.1128/jcm.00364-16","title":"Does Choice Matter? Reference-Based Alignment for Molecular Epidemiology of Tuberculosis","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Tuberculosis; Epidemiology; Molecular epidemiology; Medicine; Computational biology; Biology; Pathology; Genetics; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.06297506,0.0004274326,0.00129774,0.00120948,0.0008250204,0.003267254,0.001618737,0.001708043,0.003554302],"category_scores_gemma":[0.1822854,0.0005418453,0.0006785189,0.003200228,0.002204753,0.006163215,0.001212921,0.00213137,0.001748794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008829446,"about_ca_system_score_gemma":0.0009939579,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001708029,"about_ca_topic_score_gemma":0.004114991,"domain_scores_codex":[0.9361763,0.04991519,0.00333184,0.005262306,0.004285126,0.00102919],"domain_scores_gemma":[0.8896008,0.088189,0.007022839,0.008838872,0.004957336,0.001391126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.005489592,0.0004704311,0.3016918,0.00413428,0.002886837,0.001338818,0.008079335,0.0126054,0.0600242,0.08159627,0.03542581,0.4862573],"study_design_scores_gemma":[0.0009559867,0.002158909,0.3200783,0.004750404,0.002181362,0.003686334,0.008445597,0.08769398,0.06030938,0.3102345,0.1986043,0.0009011347],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6992883,0.04178143,0.1889929,0.05016648,0.002788266,0.0001848225,0.002367228,0.0008442116,0.01358624],"genre_scores_gemma":[0.9379646,0.00493673,0.04852909,0.004978023,0.0006634379,0.0001064338,0.001144918,0.0007033317,0.0009736108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06297506,"threshold_uncertainty_score":0.3330479,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1046024721134934,"score_gpt":0.4457550694883836,"score_spread":0.3411525973748902,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}