{"id":"W2343181984","doi":"10.1186/s12864-016-2604-7","title":"Consensus pan-genome assembly of the specialised wine bacterium Oenococcus oeni","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Wine Australia; Australian Government; Alberta Water Research Institute","keywords":"Oenococcus oeni; Biology; Genome; Wine; Bacteria; Genetics; Computational biology; Malolactic fermentation; DNA microarray; Gene; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000453597,0.0007005068,0.0008447949,0.001311669,0.0004676007,0.0007709361,0.0005074588,0.0005545737,0.002112153],"category_scores_gemma":[0.001520341,0.0003463249,0.0007905663,0.001871897,0.0001715481,0.0006008651,0.0006970543,0.000714796,0.001005522],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004165415,"about_ca_system_score_gemma":0.0007344217,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003183432,"about_ca_topic_score_gemma":0.006413714,"domain_scores_codex":[0.99968,0.0000358169,0.00002728524,0.0001432664,0.00007406098,0.00003954015],"domain_scores_gemma":[0.9993265,0.0001418453,0.0001096481,0.00008475819,0.0002477783,0.0000895657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001283476,0.0001026201,0.01193667,0.001362797,0.0001687427,0.0005200722,0.0007449492,0.005055684,0.9393219,0.0008352349,0.001795497,0.03687235],"study_design_scores_gemma":[0.0002191626,0.001699461,0.4018698,0.0005577751,0.001259366,0.003316052,0.002856031,0.07596103,0.4124193,0.003194094,0.0963858,0.0002621255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8828421,0.00247902,0.06640225,0.0001523832,0.0001006861,0.0002452013,0.04272171,0.001346746,0.003709927],"genre_scores_gemma":[0.6227108,0.00174967,0.1874279,0.00009410679,0.00003102005,0.0003196009,0.1835584,0.0009822252,0.003126206],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003183432,"threshold_uncertainty_score":0.007065833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03406470337136335,"score_gpt":0.2233703016082933,"score_spread":0.18930559823693,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}