{"id":"W2343181984","doi":"10.1186/s12864-016-2604-7","title":"Consensus pan-genome assembly of the specialised wine bacterium Oenococcus oeni","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Wine Australia; Australian Government; Alberta Water Research Institute","keywords":"Oenococcus oeni; Biology; Genome; Wine; Bacteria; Genetics; Computational biology; Malolactic fermentation; DNA microarray; Gene; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001196702,0.00009656739,0.0001565833,0.000008523331,0.0001036415,0.00002053714,0.0002363733,0.00004966687,0.0006708713],"category_scores_gemma":[0.00004848244,0.00002629292,0.0001602733,0.0001651866,0.00009165827,0.00002441749,0.00005701303,0.000031458,0.00007124778],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003760949,"about_ca_system_score_gemma":0.00001694016,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005029784,"about_ca_topic_score_gemma":0.0006156121,"domain_scores_codex":[0.999198,0.0001054332,0.000249341,0.0001721155,0.0001141029,0.0001610485],"domain_scores_gemma":[0.9994841,0.0001578125,0.0001496677,0.00009614298,0.0000616619,0.00005066926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003591034,0.00002569677,0.004278069,0.000002035056,0.00001427223,4.717754e-7,0.00004701719,0.000005326061,0.9930803,0.0000913038,0.000264163,0.002155502],"study_design_scores_gemma":[0.0003608884,0.00007421606,0.8431132,0.000007116237,0.00004199484,0.000003888423,0.0003202831,0.00002482842,0.1154417,0.0001686621,0.04026832,0.0001749026],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996349,0.0000149908,0.00000524817,0.002165664,0.0001322417,0.0001380437,0.000123207,0.00002172336,0.001049847],"genre_scores_gemma":[0.9968425,0.00001702328,0.0001341296,0.0002221836,0.0002977893,0.000002777087,0.00001293873,9.669008e-7,0.002469682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8776385,"threshold_uncertainty_score":0.7345571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03406470337136335,"score_gpt":0.2233703016082933,"score_spread":0.18930559823693,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}