{"id":"W2345166605","doi":"10.1093/molbev/msw067","title":"Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements","year":2016,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Exaptation; Biology; Evolutionary biology; Transposable element; Genome; Paraphyly; Context (archaeology); Phylogenetic tree; Key (lock); Gene; Genetics; Clade; Ecology; Paleontology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002820303,0.000237833,0.0002850542,0.001150536,0.0003430582,0.0003417388,0.0001961929,0.0004786336,0.0006773492],"category_scores_gemma":[0.0006897437,0.0001463993,0.0002631409,0.001090126,0.0002812264,0.0004426175,0.0003571424,0.0006557298,0.0004088166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002019439,"about_ca_system_score_gemma":0.0001966171,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004594138,"about_ca_topic_score_gemma":0.001130844,"domain_scores_codex":[0.9998623,0.00001517377,0.00001225105,0.00005777858,0.00003127249,0.00002126546],"domain_scores_gemma":[0.9994277,0.0001989099,0.0001840019,0.00005327241,0.00005320224,0.0000827992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000517069,0.0001061773,0.07050572,0.0004095449,0.00008981584,0.0004463919,0.000443242,0.0008349041,0.8801342,0.0009289327,0.0001194552,0.04546461],"study_design_scores_gemma":[0.0000440792,0.0004656253,0.9193565,0.00009960654,0.0003106067,0.002367556,0.0008412402,0.006043739,0.05427164,0.00195168,0.01420909,0.00003865689],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903587,0.003268908,0.004144613,0.0001048556,0.00001125277,0.00002407914,0.0008730811,0.00004566347,0.001168989],"genre_scores_gemma":[0.9827115,0.001800224,0.01204605,0.0001744675,0.00002541273,0.00002183423,0.002638272,0.00001970721,0.0005625732],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001150536,"threshold_uncertainty_score":0.00226593,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01977464641399821,"score_gpt":0.2490275340005242,"score_spread":0.229252887586526,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}