{"id":"W2345223842","doi":"10.1101/050328","title":"Genetic and chemical differentiation of <i>Campylobacter coli</i> and <i>Campylobacter jejuni</i> lipooligosaccharide pathways","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences","funders":"Medical Research Council; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Helsingin Yliopisto","keywords":"Campylobacter jejuni; Biology; Genetics; Genetic diversity; Locus (genetics); Campylobacter; Escherichia coli; Population; Genome; Gene; Phenotype; Campylobacter coli; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002084907,0.0002832467,0.0002315658,0.001074472,0.0002551334,0.0004677206,0.0002450057,0.0003208019,0.0007752366],"category_scores_gemma":[0.0005870129,0.0002288769,0.0002705867,0.0006373361,0.0003064609,0.0002025939,0.0004399205,0.0003481269,0.0001939267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003279218,"about_ca_system_score_gemma":0.0002397417,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002457292,"about_ca_topic_score_gemma":0.002456143,"domain_scores_codex":[0.9996083,0.00004270778,0.00004049646,0.0001217922,0.00008198248,0.0001046702],"domain_scores_gemma":[0.9992921,0.0001301063,0.000220877,0.00007340038,0.0001294107,0.0001541438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002666548,0.00006003622,0.01923284,0.00004012676,0.00002354548,0.00009069194,0.0001023621,0.00007843518,0.9775038,0.00004778164,0.0000309293,0.002522818],"study_design_scores_gemma":[0.00001716045,0.000694501,0.8003282,0.00002345842,0.00007449689,0.001308098,0.0006241176,0.001085187,0.1945018,0.0001264918,0.001187499,0.00002902906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988102,0.00007252491,0.0003507937,0.0000161963,0.000002336496,0.00001411682,0.0003362982,0.00000595071,0.0003915466],"genre_scores_gemma":[0.9974862,0.00006676424,0.001068639,0.00003047515,0.000003782751,0.00002147184,0.001039225,0.000009976872,0.0002733217],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002457292,"threshold_uncertainty_score":0.004886031,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01379993148205916,"score_gpt":0.1893460568865982,"score_spread":0.1755461254045391,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}