{"id":"W2345791363","doi":"10.1093/nar/gkw387","title":"PHASTER: a better, faster version of the PHAST phage search tool","year":2016,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3760,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"Canadian Institutes of Health Research; Genome Alberta; Genome Canada","keywords":"Genome; Graphical user interface; Biology; Software; Annotation; Visualization; GenBank; Metagenomics; Bacterial genome size; Computational biology; Identification (biology); Perl; User interface; Computer science; Data mining; Operating system; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003149337,0.002735324,0.002685932,0.002279587,0.001095094,0.003535127,0.003985424,0.002205812,0.07204411],"category_scores_gemma":[0.005919801,0.002633015,0.003336211,0.001995534,0.0005490565,0.005238466,0.003409083,0.004517193,0.06274267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007286727,"about_ca_system_score_gemma":0.001682529,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004104844,"about_ca_topic_score_gemma":0.003509813,"domain_scores_codex":[0.9976729,0.0002964196,0.0002093647,0.0004564924,0.0010059,0.0003589781],"domain_scores_gemma":[0.9980234,0.0005975874,0.0001205263,0.0005080096,0.0005166915,0.0002338495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003880651,0.0003280466,0.003169524,0.001982064,0.0004452752,0.00073522,0.0004627564,0.004759498,0.06430224,0.006033431,0.6571764,0.2567249],"study_design_scores_gemma":[0.001312576,0.0005418231,0.003556714,0.0004498697,0.0002206013,0.001316473,0.0001289641,0.04881161,0.0714004,0.007025477,0.8643456,0.0008898276],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"software","genre_gemma":"methods","genre_scores_codex":[0.01201047,0.003603252,0.2302786,0.0009372456,0.001640518,0.0004888998,0.03690584,0.6956698,0.01846546],"genre_scores_gemma":[0.05174623,0.003093656,0.4604363,0.002921875,0.0007550927,0.001173985,0.2095788,0.2158403,0.05445372],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.07204411,"threshold_uncertainty_score":0.2410116,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03202363239463116,"score_gpt":0.3069429724436617,"score_spread":0.2749193400490305,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}