{"id":"W2346013961","doi":"10.1186/s12977-016-0267-8","title":"Characterization of novel Bovine Leukemia Virus (BLV) antisense transcripts by deep sequencing reveals constitutive expression in tumors and transcriptional interaction with viral microRNAs","year":2016,"lang":"en","type":"article","venue":"Retrovirology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Saskatchewan Health Authority","funders":"Amis de l'Institut Bordet; Fonds De La Recherche Scientifique - FNRS","keywords":"Bovine leukemia virus; microRNA; Virology; Biology; Leukemia; Virus; Gene; Computational biology; Molecular biology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001578423,0.0002433146,0.0004946334,0.0001955398,0.0001194046,0.000005380093,0.00009237935,0.0002926305,0.00006721874],"category_scores_gemma":[0.00003668971,0.0001622804,0.00005513236,0.0001015774,0.0008367315,0.000233365,0.00002995932,0.0002574337,0.000009922108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001791449,"about_ca_system_score_gemma":0.00007722152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001956069,"about_ca_topic_score_gemma":0.000162973,"domain_scores_codex":[0.9985464,0.0001820232,0.0004572776,0.000415733,0.00004873459,0.0003498368],"domain_scores_gemma":[0.999418,0.0001056548,0.0002505287,0.0001350596,0.00006315502,0.00002764742],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001904616,0.00009673119,0.009866705,0.00003168348,0.00007796336,0.000009878571,0.0007881473,0.000002201147,0.9860063,0.0003489386,0.00003396732,0.000832902],"study_design_scores_gemma":[0.004405512,0.0008599766,0.03788904,0.0002380233,0.00004668245,0.0002681914,0.0001866898,0.000006737201,0.9546528,0.00002160399,0.001192532,0.0002322115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924842,0.0009769856,0.005284073,0.0001880754,0.0002979811,0.0002491449,0.0003718426,0.00003145673,0.000116306],"genre_scores_gemma":[0.9987686,0.0004791233,0.0001028303,0.0001324317,0.000023021,0.00001730555,0.0001394212,0.00001732304,0.0003199677],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03135347,"threshold_uncertainty_score":0.6617603,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0116393855171854,"score_gpt":0.2124214858097981,"score_spread":0.2007821002926127,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}