{"id":"W2357888714","doi":"10.1080/19490976.2016.1188248","title":"Rebooting the microbiome","year":2016,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Queen's University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Colitis; Biology; Cecum; Gut flora; Microbiome; Inflammatory bowel disease; Context (archaeology); Immunology; Salmonella; Antibiotics; Inflammation; Microbiology; Barrier function; Disease; Bacteria; Bioinformatics; Internal medicine; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001993192,0.0001330109,0.00009638389,0.00002750691,0.0001742624,0.00002405595,0.0002774779,0.0001035079,0.00007744591],"category_scores_gemma":[0.0000373951,0.00006994784,0.00008478419,0.0000596336,0.0001315628,0.000002497544,0.0001457621,0.00005447619,0.0002380284],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001591803,"about_ca_system_score_gemma":0.00006451912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002339794,"about_ca_topic_score_gemma":0.00006281406,"domain_scores_codex":[0.9991115,0.00005395885,0.0001749006,0.000284301,0.00003953468,0.0003358086],"domain_scores_gemma":[0.9994138,0.0000174071,0.00006408668,0.0004042436,0.00004956417,0.00005087769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001387326,0.00001464631,0.000908518,0.000008363041,0.0000167838,8.768878e-7,0.00003912127,9.906598e-8,0.9588783,0.00009536846,0.03670111,0.00332291],"study_design_scores_gemma":[0.0003174127,0.0000537526,0.00373477,0.00002834224,0.00000692877,0.00005889736,0.00003388634,1.590717e-7,0.4948155,0.00004722266,0.5007725,0.0001306496],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992482,0.001243562,0.0008069518,0.003642626,0.0002597751,0.0001751275,0.00003983595,0.00002427117,0.001325829],"genre_scores_gemma":[0.9894128,0.0002586368,0.0005393547,0.00146126,0.0003460388,0.000007594062,0.0000220808,0.00002468271,0.007927489],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4640714,"threshold_uncertainty_score":0.3059453,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006437680663314772,"score_gpt":0.2276158760019885,"score_spread":0.2211781953386737,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}