{"id":"W2364603449","doi":"10.1101/053009","title":"Conceptual Confusion: The case of Epigenetics","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; Alberta Innovates","keywords":"Epigenetics; Reductionism; DNA methylation; Biology; Ambiguity; Cognitive science; Evolutionary biology; Confusion; Genetics; Gene; Epistemology; Psychology; Gene expression; Philosophy; Linguistics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005529509,0.000378734,0.0003443617,0.00006602279,0.0001408647,0.00004633825,0.0004776453,0.0006134706,0.0000372216],"category_scores_gemma":[0.0002486716,0.0002845868,0.0001877311,0.0001156364,0.0004528041,0.000002937683,0.0006680372,0.0002723355,0.00001183322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003079214,"about_ca_system_score_gemma":0.0004200699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003042098,"about_ca_topic_score_gemma":0.000005986717,"domain_scores_codex":[0.9980645,0.0002116861,0.0005217657,0.0006682117,0.0001916112,0.0003422847],"domain_scores_gemma":[0.9971944,0.00005726352,0.0004838824,0.00151721,0.0005978076,0.0001494219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002315502,0.00004598254,0.001642391,0.00005048583,0.0001089176,0.00005757315,0.000009232028,0.0000449321,0.9966108,0.00121749,0.0001747961,0.00001431132],"study_design_scores_gemma":[0.0003802809,0.0001285072,0.003697867,0.00008331789,0.0000831526,8.068804e-8,0.000007958178,0.0000304945,0.9711878,0.00001495676,0.02397989,0.0004057396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828882,0.009391637,0.005765823,0.0001805327,0.0008451376,0.0004921168,0.0003634426,0.00002782554,0.00004531851],"genre_scores_gemma":[0.9961258,0.001828784,0.001053981,0.00009107023,0.0007419082,0.0000624531,9.625413e-7,0.00007844564,0.00001663929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02542297,"threshold_uncertainty_score":0.9999606,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01527481347076578,"score_gpt":0.2395414365703442,"score_spread":0.2242666230995784,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}