{"id":"W2368482903","doi":"10.1101/053124","title":"Multiscale quantification of tissue behavior during amniote embryo axis elongation","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Paraxial mesoderm; Convergent extension; Morphogenesis; Biology; Ectoderm; Mesoderm; Embryo; Cell biology; Notochord; Anatomy; Quail; Endoderm; Epiblast; Embryogenesis; Elongation; Process (computing); Gastrulation; Embryonic stem cell; Computer science; Genetics; Materials science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003057375,0.0003409078,0.000310826,0.0001344675,0.0001213534,0.0000270801,0.0003100643,0.0007807434,0.0000190469],"category_scores_gemma":[0.00009122254,0.0003392082,0.0001078902,0.0001254554,0.0001527048,0.00001149034,0.0003005805,0.0001751893,0.00003378133],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007217634,"about_ca_system_score_gemma":0.0001956196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001272998,"about_ca_topic_score_gemma":0.000004819408,"domain_scores_codex":[0.9981015,0.0001186776,0.000516908,0.0007920562,0.0001792814,0.0002916294],"domain_scores_gemma":[0.9982932,0.00001095481,0.0004880144,0.0008536999,0.0002522711,0.0001018485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000557148,0.00008570736,0.01972306,0.0001242052,0.0000726064,0.000002819594,0.000003518205,0.00001385133,0.9797998,0.00003290914,0.0000550553,0.0000307236],"study_design_scores_gemma":[0.0002374123,0.0000305395,0.4109055,0.00007343321,0.00003164289,2.617666e-8,6.159765e-7,0.000006383427,0.5879595,8.729418e-7,0.0005080437,0.0002460592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993908,0.0005666506,0.003834914,0.00007437516,0.0007244875,0.0006339938,0.000194393,0.00005580513,0.000007346931],"genre_scores_gemma":[0.9967775,0.0002199284,0.002374667,0.00001574429,0.0002892404,0.0001878601,0.00001333736,0.0000586773,0.00006305196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3918403,"threshold_uncertainty_score":0.999906,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00939541823985783,"score_gpt":0.2347628686319618,"score_spread":0.225367450392104,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}