{"id":"W2369729543","doi":"10.1089/cmb.2010.0092","title":"Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II","year":2010,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Centre National de la Recherche Scientifique; Agence Nationale de la Recherche","keywords":"Genome; Yeast; Biology; Computational biology; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01148624,0.000880524,0.001281311,0.001985273,0.0008973462,0.002410959,0.002077675,0.001941521,0.002173722],"category_scores_gemma":[0.05730147,0.0009800727,0.001824224,0.001623441,0.002355055,0.003036284,0.002416399,0.003941342,0.0005698981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009076928,"about_ca_system_score_gemma":0.001159286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002246488,"about_ca_topic_score_gemma":0.001195613,"domain_scores_codex":[0.9957195,0.003086336,0.0001896271,0.0003211366,0.0005789489,0.0001044473],"domain_scores_gemma":[0.9714968,0.02339842,0.0005707184,0.003345628,0.0009231867,0.0002653027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0004082898,0.0001170568,0.006513263,0.0005562517,0.0005968102,0.0001479839,0.0003291075,0.6072575,0.001744262,0.2644447,0.00378478,0.1140999],"study_design_scores_gemma":[0.00003174908,0.00002044429,0.0004710185,0.00007552233,0.00001767497,0.00003037914,0.00003218364,0.8346744,0.000547781,0.162057,0.002015645,0.00002614593],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02687388,0.002997909,0.9632943,0.002924137,0.0002378457,0.00007089919,0.0003466731,0.00107064,0.002183759],"genre_scores_gemma":[0.3664156,0.002415841,0.6271534,0.0005890799,0.0003819492,0.0004462186,0.0008891727,0.0008481072,0.0008607053],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01148624,"threshold_uncertainty_score":0.06074572,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0171202863078199,"score_gpt":0.3258122984228377,"score_spread":0.3086920121150178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}