{"id":"W2381287051","doi":"10.1371/journal.pone.0155441","title":"Comparative Mitogenomics of Leeches (Annelida: Clitellata): Genome Conservation and Placobdella-Specific trnD Gene Duplication","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Leech Biology and Applications","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"Universidad Nacional Autónoma de México; Generalitat Valenciana; FP7 People: Marie-Curie Actions; Consejo Superior de Investigaciones Científicas; Ministerio de Economía y Competitividad; Consejo Nacional de Ciencia y Tecnología; Natural Sciences and Engineering Research Council of Canada; European Commission; Royal Ontario Museum","keywords":"Biology; Clitellata; Mitochondrial DNA; Genome; Gene duplication; Phylogenetic tree; Evolutionary biology; Genetics; Gene; Phylogenetics; Monophyly; Zoology; Clade","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001254382,0.0001032182,0.0003069919,0.00006232751,0.00006387762,0.000004986711,0.00006215286,0.0001126034,0.00005442792],"category_scores_gemma":[0.00002939231,0.00007646788,0.00002856406,0.0001074178,0.0002371061,0.00005195906,0.00002765344,0.00007079129,0.00006508136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000420146,"about_ca_system_score_gemma":0.0000367144,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008250508,"about_ca_topic_score_gemma":0.000003617105,"domain_scores_codex":[0.9992203,0.00002984211,0.0002847606,0.0002467388,0.00009581784,0.0001224997],"domain_scores_gemma":[0.9991087,0.0001909734,0.000144437,0.0002895511,0.0001959873,0.00007036272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001613017,0.0004737905,0.01797671,0.00004341155,0.0001597384,4.79245e-7,0.0002463935,3.273215e-7,0.979454,0.0009181563,0.0001800842,0.0003855586],"study_design_scores_gemma":[0.001415601,0.0002304927,0.1498068,0.0001061777,0.0001793431,0.00001054127,0.0000770734,0.00008361369,0.8437495,0.0007280268,0.003472217,0.0001406211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924497,0.001041982,0.001120836,0.004185862,0.00001106841,0.0005329083,0.00008351891,0.00003653016,0.0005375653],"genre_scores_gemma":[0.9909075,0.001600118,0.006520584,0.0001828168,0.0001333529,0.00005116213,0.0001085694,0.00001039156,0.0004855194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1357046,"threshold_uncertainty_score":0.3118269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1163996845237329,"score_gpt":0.2662672051510012,"score_spread":0.1498675206272683,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}