{"id":"W2397044753","doi":"10.7717/peerj.2595","title":"The mosaic architecture of <i>Aeromonas salmonicida</i> subsp. <i>salmonicida</i> pAsa4 plasmid and its consequences on antibiotic resistance","year":2016,"lang":"en","type":"article","venue":"PeerJ","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; University of Bern","keywords":"Aeromonas salmonicida; Biology; Plasmid; Mobile genetic elements; Antibiotic resistance; Microbiology; Gene; Antibiotics; Bacteria; Genetics; Genomic island; Escherichia coli; Horizontal gene transfer; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002552258,0.0002698123,0.0003188026,0.00005768125,0.0003164717,0.00002407309,0.0003959345,0.0001675318,0.0000712398],"category_scores_gemma":[0.0001328475,0.0001411075,0.0001122647,0.0001323755,0.000736328,0.00005929809,0.000119049,0.0001932294,0.0002081628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003228636,"about_ca_system_score_gemma":0.00004585133,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002018901,"about_ca_topic_score_gemma":0.0001923957,"domain_scores_codex":[0.9985593,0.0001720155,0.0003188942,0.0004247078,0.00007418157,0.0004509002],"domain_scores_gemma":[0.9988636,0.0004392107,0.0002036462,0.0003784221,0.00007770032,0.00003743953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004978736,0.00007402155,0.0006436799,0.00005770378,0.0001990186,0.00001397689,0.0002145429,0.000001278427,0.9530866,0.01024165,0.03292158,0.002048079],"study_design_scores_gemma":[0.001447836,0.0001801292,0.002927915,0.0002712773,0.0001129756,0.00002838071,0.0001482117,2.66926e-7,0.7442586,0.000825355,0.2494928,0.0003062106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9590286,0.02415388,0.00001987583,0.009869714,0.0004852109,0.0005327416,0.000346223,0.0001070302,0.005456732],"genre_scores_gemma":[0.9836849,0.0009159646,0.00001736756,0.0003725356,0.00002505666,0.000009058814,0.00004057211,0.00002095376,0.0149136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2165712,"threshold_uncertainty_score":0.5754196,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008245316713412484,"score_gpt":0.2136774844080295,"score_spread":0.205432167694617,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}