{"id":"W2399181677","doi":"10.1038/srep19427","title":"The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Cynara cardunculus studies","field":"Agricultural and Biological Sciences","cited_by":147,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"University of California, Davis; Ministero dell’Istruzione, dell’Università e della Ricerca; National Science Foundation","keywords":"Biology; Cynara; Genome; Whole genome sequencing; Sequence assembly; Illumina dye sequencing; Genetics; DNA sequencing; Outcrossing; Outbreeding depression; Botany; Gene; Inbreeding; Transcriptome; Population; Pollen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003378353,0.0006674388,0.0005378316,0.0008318816,0.0008239022,0.0006597341,0.0004892416,0.0006053483,0.002596346],"category_scores_gemma":[0.0004419277,0.0003294459,0.0006336802,0.001154937,0.0002387617,0.0002586031,0.000400012,0.001043186,0.003060405],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004008414,"about_ca_system_score_gemma":0.001058233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004025287,"about_ca_topic_score_gemma":0.009845262,"domain_scores_codex":[0.9998431,0.00001310891,0.00001259816,0.00006822051,0.00004144275,0.00002143121],"domain_scores_gemma":[0.999741,0.000051668,0.00005245143,0.0000487602,0.00006051002,0.00004552715],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003319922,0.00004966832,0.001587505,0.000350525,0.00003747113,0.0004202132,0.0002491355,0.0005209771,0.9779159,0.0005232375,0.001467486,0.01654589],"study_design_scores_gemma":[0.0002764477,0.000755569,0.1812926,0.000378209,0.0007040989,0.003181973,0.000519113,0.009757701,0.4456902,0.001414011,0.355794,0.0002361991],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6609262,0.001987661,0.1333992,0.0002861447,0.0003548226,0.001233049,0.1814339,0.003692218,0.01668678],"genre_scores_gemma":[0.2935715,0.001795746,0.2108943,0.0002163339,0.00006071414,0.001001891,0.4741654,0.001790005,0.0165041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004025287,"threshold_uncertainty_score":0.008685648,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03624628816466984,"score_gpt":0.2510824241456579,"score_spread":0.2148361359809881,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}