{"id":"W2399689377","doi":"10.1128/genomea.00383-16","title":"Draft Genome Sequence of a Novel Acidophilic Iron-Oxidizing <i>Firmicutes</i> Species, “ <i>Acidibacillus ferrooxidans</i> ” (SLC66 <sup>T</sup> )","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministério da Ciência, Tecnologia e Inovação; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Vale Canada Limited","keywords":"Oxidizing agent; Whole genome sequencing; Firmicutes; Biology; Sequence (biology); Genome; Genetics; Microbiology; Bacteria; Gene; Chemistry; Organic chemistry; 16S ribosomal RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004456669,0.0004853565,0.0005079867,0.0002247475,0.0001723476,0.0000681462,0.0005770008,0.0001506413,0.0005875748],"category_scores_gemma":[0.0000423915,0.0003924399,0.0001986152,0.000434238,0.0001425237,0.0005487967,0.0001518638,0.0002565664,0.0002647738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004000094,"about_ca_system_score_gemma":0.00006311077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003680078,"about_ca_topic_score_gemma":0.000007854915,"domain_scores_codex":[0.997161,0.0000445891,0.0008104578,0.0005524299,0.0006188786,0.0008126778],"domain_scores_gemma":[0.9987437,0.00005189575,0.000182737,0.0006569369,0.0001197169,0.0002449978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002268257,0.0001022219,0.0001687048,0.000126513,0.000108339,0.00001195559,0.0004866905,0.004536747,0.9923024,0.00008114773,0.0003041352,0.00174844],"study_design_scores_gemma":[0.002030936,0.0001645375,0.001323634,0.0001655091,0.00006813948,0.00006225751,0.0003010285,0.002010298,0.01591505,0.00003916474,0.9769759,0.0009435815],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9433805,0.001671894,0.03105434,0.0004818781,0.001165966,0.001005213,0.003635837,0.0006889342,0.01691541],"genre_scores_gemma":[0.99188,0.0008396979,0.002347593,0.0006001287,0.0003424529,0.00003795026,0.0002985867,0.00008464953,0.003568948],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9766718,"threshold_uncertainty_score":0.9998528,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03727884410914119,"score_gpt":0.2328432641861817,"score_spread":0.1955644200770405,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}