{"id":"W2401688307","doi":"10.3389/fmicb.2016.00701","title":"Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium","year":2016,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":190,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Rumen; Biology; Ruminococcus; Dry matter; Animal science; Firmicutes; Latin square; Prevotella; Bacteroidetes; Food science; Microbiology; Feces; Fermentation; Biochemistry; 16S ribosomal RNA; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003138522,0.0002267107,0.0005262528,0.0002063928,0.0001762732,0.0005119714,0.0001803882,0.0003244324,0.0009482512],"category_scores_gemma":[0.0002811763,0.000181857,0.0003122774,0.0001582446,0.0003244736,0.0002360393,0.000439343,0.0006267265,0.0001649487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003209769,"about_ca_system_score_gemma":0.0002950907,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004564662,"about_ca_topic_score_gemma":0.0009155339,"domain_scores_codex":[0.9996786,0.00006721387,0.00002846107,0.00007609963,0.00004934624,0.0001002652],"domain_scores_gemma":[0.9995666,0.00005561796,0.0001568825,0.00004528362,0.00003504193,0.0001405195],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005607293,0.0003997986,0.005213529,0.0000595297,0.00001915572,0.00006323205,0.00006337665,0.00007681318,0.9858947,0.0000245137,0.00003321419,0.002544868],"study_design_scores_gemma":[0.0003272925,0.03612059,0.3371236,0.00004073413,0.0001366732,0.0004955335,0.0008497575,0.001743209,0.6206347,0.0002123675,0.002278307,0.0000371593],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991998,0.0001855877,0.0003020875,0.00002158525,0.000007570354,0.00001719852,0.00009686164,0.00000812443,0.0001611715],"genre_scores_gemma":[0.9978543,0.0002376445,0.0007765506,0.00007697865,0.000009024765,0.00006652722,0.0002543592,0.000006058213,0.0007185714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009482512,"threshold_uncertainty_score":0.003172219,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00827683398013578,"score_gpt":0.1922687176217803,"score_spread":0.1839918836416445,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}