{"id":"W2401866185","doi":"10.1186/s12864-016-2720-4","title":"Genome-wide analysis of the transcriptional response to porcine reproductive and respiratory syndrome virus infection at the maternal/fetal interface and in the fetus","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Government of Saskatchewan; University of Alberta; Ministry of Agriculture - Saskatchewan; Genome Canada; Alberta Livestock and Meat Agency; Genome Prairie; Alberta Innovates; McGill University","keywords":"Biology; Fetus; Immune system; Immunology; Porcine reproductive and respiratory syndrome virus; Innate immune system; Gene expression; Acquired immune system; Gene; Endometrium; Downregulation and upregulation; Andrology; Virus; Pregnancy; Genetics; Endocrinology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008230504,0.00009515355,0.0001427823,0.00003428198,0.0002643539,0.00002069596,0.0001230528,0.00003426808,0.00003712618],"category_scores_gemma":[0.000170826,0.00002404289,0.00007156984,0.0004408238,0.0002039475,0.00004862154,0.0001485551,0.00005907949,0.000005451109],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000866439,"about_ca_system_score_gemma":0.000006999485,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004706689,"about_ca_topic_score_gemma":0.01841426,"domain_scores_codex":[0.9990361,0.0002966009,0.0001936995,0.0002496747,0.0001056831,0.0001182053],"domain_scores_gemma":[0.9993568,0.0003891975,0.00008333316,0.0001113692,0.00003840282,0.0000208909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003842698,0.0000143395,0.4421701,0.000001423288,0.00005249241,3.958298e-7,0.0004330771,0.00007566912,0.5565035,0.00001030835,0.000009129634,0.0003453021],"study_design_scores_gemma":[0.00008139092,0.0001593948,0.9909912,0.000005652734,0.00008070296,0.00001461136,0.0002387174,0.000003127377,0.004123087,0.00005962458,0.00418051,0.00006201477],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974905,0.0003999545,0.00002457891,0.00166172,0.00004710997,0.0002652952,0.00007397312,0.000007175848,0.00002966428],"genre_scores_gemma":[0.9994298,0.0001077306,0.000009864124,0.0001656072,0.00003150772,0.00002161054,6.860024e-7,9.930301e-7,0.0002322329],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5523804,"threshold_uncertainty_score":0.9994971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03027455104133169,"score_gpt":0.2384851315704409,"score_spread":0.2082105805291092,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}