{"id":"W2402456296","doi":"10.4238/2015.december.3.2","title":"Letter to the Editor Accurate description of phages and their genomes - Genet. Mol. Res. 14 (1): 190-198 “Bioinformatic analysis of phage AB3, a phiKMV-like virus infecting Acinetobacter baumannii”","year":2015,"lang":"en","type":"letter","venue":"Genetics and Molecular Research","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Genome; Biology; Acinetobacter baumannii; Computational biology; Microbiology; Virology; Gene; Genetics; Bacteria; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008223002,0.0003130391,0.000479606,0.0003420255,0.0002687004,0.00028964,0.0005457797,0.000306344,0.0002005731],"category_scores_gemma":[0.00006216158,0.0002256633,0.0001584235,0.0005117072,0.0004393017,0.0001507792,0.001105442,0.0008627444,0.00002121533],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009233355,"about_ca_system_score_gemma":0.00002358883,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001250983,"about_ca_topic_score_gemma":0.0004164829,"domain_scores_codex":[0.997665,0.0002804658,0.0005179341,0.0004675626,0.0005419544,0.0005270106],"domain_scores_gemma":[0.9985547,0.0001025404,0.0002841445,0.0007738515,0.0001484971,0.000136263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001583482,0.00002359587,0.0001424105,0.00006925651,0.0003513428,0.000008571064,0.0009567604,0.0001386516,0.4551158,1.482851e-7,0.5398138,0.003363888],"study_design_scores_gemma":[0.000258782,0.0002204762,0.003729563,0.0000511061,0.0003191477,0.000007990901,0.0001123388,0.0009800154,0.03602374,0.0000143203,0.9579849,0.000297633],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9707571,0.002678359,0.0009690477,0.02275041,0.0006136165,0.001077376,0.0006777202,0.00001185782,0.000464521],"genre_scores_gemma":[0.9127483,0.004056364,0.001175552,0.07573161,0.002841308,0.0001843413,0.0006836046,0.0001575899,0.002421267],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.419092,"threshold_uncertainty_score":0.9202284,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04105383428551979,"score_gpt":0.3042522511896988,"score_spread":0.2631984169041791,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}