{"id":"W2404548783","doi":"10.1128/msystems.00062-16","title":"mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking","year":2016,"lang":"en","type":"article","venue":"mSystems","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Cancer Institute","keywords":"Metadata; Raw data; Computer science; Sample (material); Data science; Benchmarking; Resource (disambiguation); Data set; Transparency (behavior); Redundancy (engineering); Data mining; World Wide Web; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01369505,0.002932887,0.002747637,0.008112825,0.002680765,0.004830393,0.007705704,0.002185013,0.0341568],"category_scores_gemma":[0.03886491,0.002029808,0.002235631,0.01054139,0.001071696,0.006521328,0.009999168,0.003667988,0.02897647],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001480614,"about_ca_system_score_gemma":0.006207278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004878167,"about_ca_topic_score_gemma":0.005908528,"domain_scores_codex":[0.9913788,0.002810394,0.001071565,0.001250652,0.002769188,0.000719416],"domain_scores_gemma":[0.9810564,0.005877516,0.001359407,0.006274612,0.003313591,0.002118418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003282782,0.0008395817,0.01322017,0.004462105,0.001021161,0.000558248,0.001299601,0.013403,0.02323558,0.01245444,0.810281,0.1159423],"study_design_scores_gemma":[0.001173012,0.0005529757,0.01419669,0.001236036,0.0004616594,0.0008859984,0.0008459846,0.09382702,0.03463676,0.03770885,0.8137451,0.0007298336],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.02714383,0.002289321,0.1723581,0.001538744,0.0009420755,0.001297605,0.3372985,0.4228743,0.03425766],"genre_scores_gemma":[0.05059434,0.0008546305,0.1953836,0.0007244088,0.0001716251,0.002260832,0.6805274,0.06522964,0.004253535],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.0341568,"threshold_uncertainty_score":0.1142659,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01763070581664468,"score_gpt":0.2452817061569953,"score_spread":0.2276510003403507,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}