{"id":"W2407259176","doi":"10.1128/iai.00324-16","title":"Distribution and Evolution of Yersinia Leucine-Rich Repeat Proteins","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"National Natural Science Foundation of China","keywords":"Biology; Leucine; Yersinia; Bacterial protein; Microbiology; Computational biology; Bacteria; Genetics; Amino acid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002208955,0.00007531914,0.0000848366,0.00004077319,0.0001025088,0.00001167772,0.00003476234,0.0001017855,0.00001538486],"category_scores_gemma":[0.0002273578,0.00005848276,0.0000239512,0.00008377376,0.000137794,0.00001263905,0.00008041284,0.00006675667,0.000003506761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000385904,"about_ca_system_score_gemma":0.00003615564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000397559,"about_ca_topic_score_gemma":0.00007463655,"domain_scores_codex":[0.9994301,0.0001131357,0.0001220247,0.0001494058,0.00006659643,0.0001187749],"domain_scores_gemma":[0.999572,0.00001637868,0.00005599082,0.0001905429,0.0001177998,0.00004727114],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009290282,0.00003687185,0.1981249,0.00001889515,0.00001393731,1.538265e-7,0.00001403928,2.349139e-7,0.798297,0.00003958335,0.0001252453,0.003236169],"study_design_scores_gemma":[0.0004503887,0.0003648749,0.7010632,0.00002105588,0.000006671721,0.00002402348,0.00001251277,0.000006842849,0.2946662,0.00003411418,0.003282036,0.00006807438],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963078,0.0001729887,0.002873542,0.0001129348,0.00005178293,0.0001506666,0.00003432901,0.00001030989,0.0002856287],"genre_scores_gemma":[0.9992657,0.0003627223,0.00003264396,0.000006625945,0.0000372777,0.000008471689,0.00005727787,0.000005522082,0.0002237043],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5036309,"threshold_uncertainty_score":0.2384858,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009746071840530597,"score_gpt":0.2598600700294204,"score_spread":0.2501139981888898,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}