{"id":"W2408897528","doi":"10.7150/jgen.12975","title":"Whole Genome Sequence of the Soybean Aphid Endosymbiont <i>Buchnera aphidicola </i>and Genetic Differentiation among Biotype-Specific Strains","year":2015,"lang":"en","type":"article","venue":"Journal of Genomics","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brandon University","funders":"University of Illinois at Urbana-Champaign; Ohio State University; Center for Applied Plant Sciences, Ohio State University; Ohio Soybean Council; U.S. Department of Agriculture","keywords":"Buchnera; Biology; Soybean aphid; Aphid; Obligate; Genetics; Genome; Mutualism (biology); Acyrthosiphon pisum; Phylogenetic tree; Host (biology); Gene; Botany; Aphididae; PEST analysis; Homoptera","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002748635,0.0001156406,0.0002161435,0.00002098484,0.0001169348,0.00008613007,0.0003261846,0.00008097163,0.0000243246],"category_scores_gemma":[0.00002453364,0.00004097031,0.0001216536,0.0001502444,0.0001634787,0.0001609445,0.00006923886,0.0001350275,0.000001946108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005146672,"about_ca_system_score_gemma":0.0000311068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006356672,"about_ca_topic_score_gemma":0.0001226821,"domain_scores_codex":[0.9989495,0.00008716917,0.0004611124,0.0001202011,0.0002234364,0.0001585933],"domain_scores_gemma":[0.999049,0.00003252142,0.0005625754,0.00006264597,0.0001819285,0.0001113029],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002186472,0.00004085361,0.01341823,0.000003435444,0.00001524014,0.000002320141,0.0002927328,0.00001866517,0.984291,0.00006228821,0.00004688483,0.001786473],"study_design_scores_gemma":[0.0002882723,0.0004676822,0.9557863,0.00003479396,0.00003083351,0.00006551503,0.0004524695,0.0000338553,0.03386157,0.0007115626,0.008112693,0.0001544625],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983013,0.0004805207,0.00000516479,0.0005221173,0.0004630325,0.0001177912,0.00006298039,0.000004179361,0.00004291656],"genre_scores_gemma":[0.9990454,0.0002699565,0.0001381757,0.00007394621,0.0004391813,8.578021e-7,0.000007011266,0.000001392991,0.00002412929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9504294,"threshold_uncertainty_score":0.1670721,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03380522911772221,"score_gpt":0.2075381985202728,"score_spread":0.1737329694025506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}