{"id":"W2408897528","doi":"10.7150/jgen.12975","title":"Whole Genome Sequence of the Soybean Aphid Endosymbiont <i>Buchnera aphidicola </i>and Genetic Differentiation among Biotype-Specific Strains","year":2015,"lang":"en","type":"article","venue":"Journal of Genomics","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brandon University","funders":"University of Illinois at Urbana-Champaign; Ohio State University; Center for Applied Plant Sciences, Ohio State University; Ohio Soybean Council; U.S. Department of Agriculture","keywords":"Buchnera; Biology; Soybean aphid; Aphid; Obligate; Genetics; Genome; Mutualism (biology); Acyrthosiphon pisum; Phylogenetic tree; Host (biology); Gene; Botany; Aphididae; PEST analysis; Homoptera","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001871184,0.0004543776,0.0003043613,0.0007311681,0.0004088054,0.0003565263,0.0001966297,0.000434453,0.001642319],"category_scores_gemma":[0.0002928799,0.0002080901,0.0005274563,0.001146264,0.0001404205,0.0002253053,0.0002038217,0.0005463681,0.001145531],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004499402,"about_ca_system_score_gemma":0.001023957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01389937,"about_ca_topic_score_gemma":0.0183663,"domain_scores_codex":[0.9998914,0.000007917725,0.00001097679,0.00004326794,0.00003512446,0.00001130752],"domain_scores_gemma":[0.9998447,0.00002189221,0.00004856481,0.00001256483,0.00004007141,0.00003231392],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00034116,0.00003047879,0.004889776,0.0005306203,0.00005209155,0.0002784089,0.0002444626,0.0003325844,0.9819348,0.0001748389,0.002171514,0.009019194],"study_design_scores_gemma":[0.0001875309,0.0004318717,0.7420429,0.0002511224,0.0004905546,0.001774283,0.0005865556,0.004129179,0.1241133,0.0005790015,0.125315,0.00009874282],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6855249,0.004273375,0.009341114,0.0005632126,0.0001281633,0.000250353,0.2912446,0.000781755,0.007892603],"genre_scores_gemma":[0.35092,0.002570324,0.02752436,0.0002844546,0.00004243709,0.0002045489,0.6125027,0.0002621874,0.005689002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01389937,"threshold_uncertainty_score":0.02763689,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03380522911772221,"score_gpt":0.2075381985202728,"score_spread":0.1737329694025506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}