{"id":"W2412428212","doi":"10.1128/genomea.00637-15","title":"Genome Sequence of Listeria monocytogenes Strain HPB5415, Collected during a 2008 Listeriosis Outbreak in Canada","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada","funders":"","keywords":"Listeria monocytogenes; Strain (injury); Biology; Genome; Single-nucleotide polymorphism; Outbreak; Whole genome sequencing; Genetics; Pulsed-field gel electrophoresis; Nucleotide; Microbiology; Genotype; Gene; Virology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002468853,0.0003343381,0.0004095158,0.0001102042,0.00007179468,0.00003101044,0.0005890166,0.0001340893,0.00004070611],"category_scores_gemma":[0.00006044487,0.0003713786,0.00007084624,0.0003511082,0.00009114694,0.00001679856,0.0006116078,0.00008278777,0.000006664966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008365134,"about_ca_system_score_gemma":0.002137551,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1305407,"about_ca_topic_score_gemma":0.3104839,"domain_scores_codex":[0.9975777,0.0001225329,0.0007224752,0.0006077514,0.0003877417,0.0005817809],"domain_scores_gemma":[0.9985282,0.000006138461,0.0002799768,0.0007137784,0.0002475305,0.0002243132],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004476771,0.00005854048,0.02465953,0.00006533023,0.0001049701,0.00004137444,0.0003447519,0.0007709988,0.9733434,0.000001424375,0.00005860156,0.0001034126],"study_design_scores_gemma":[0.01088872,0.001718038,0.5856967,0.0001534929,0.0001228076,0.0002344873,0.003270328,0.0001464285,0.2620158,0.00006979606,0.1330106,0.00267286],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941216,0.0009521933,0.00004030599,0.00003706427,0.0004561151,0.0004760048,0.002653857,0.00001069777,0.001252187],"genre_scores_gemma":[0.996584,0.0001766174,0.000442939,0.0002077097,0.0001275174,0.00007566669,0.001457512,0.00004433545,0.0008837064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7113276,"threshold_uncertainty_score":0.9998738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09225421396326466,"score_gpt":0.2959268482043217,"score_spread":0.2036726342410571,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}