{"id":"W2412428212","doi":"10.1128/genomea.00637-15","title":"Genome Sequence of Listeria monocytogenes Strain HPB5415, Collected during a 2008 Listeriosis Outbreak in Canada","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada","funders":"","keywords":"Listeria monocytogenes; Strain (injury); Biology; Genome; Single-nucleotide polymorphism; Outbreak; Whole genome sequencing; Genetics; Pulsed-field gel electrophoresis; Nucleotide; Microbiology; Genotype; Gene; Virology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001124309,0.0002993245,0.0002867813,0.0008958047,0.0009272983,0.0004599956,0.0002721466,0.0002409128,0.001618478],"category_scores_gemma":[0.0004655052,0.0001341317,0.0002473116,0.00196641,0.0002388701,0.00009878504,0.0002397447,0.0003554913,0.0004844495],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004330803,"about_ca_system_score_gemma":0.008566593,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9007699,"about_ca_topic_score_gemma":0.9294769,"domain_scores_codex":[0.9998586,0.000004579364,0.000008562097,0.00003615347,0.00006193407,0.00003010893],"domain_scores_gemma":[0.9996217,0.00001862476,0.00005692082,0.00001293833,0.0002248038,0.00006484477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002101297,0.0002387313,0.2899975,0.0008876865,0.000218129,0.001683598,0.002189851,0.001510335,0.6313444,0.000651247,0.01233735,0.05683983],"study_design_scores_gemma":[0.00004289413,0.0001539324,0.956806,0.0001001242,0.00012465,0.000652023,0.001166962,0.0008002425,0.01154122,0.00005616623,0.02852956,0.00002630192],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.902617,0.001710672,0.0009459957,0.0003623933,0.00003737603,0.00008747687,0.08926892,0.00008062313,0.004889518],"genre_scores_gemma":[0.8411012,0.001649234,0.006756722,0.0003246072,0.00001115693,0.00006199164,0.1421019,0.00005584621,0.007937428],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09923011,"threshold_uncertainty_score":0.1996289,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09225421396326466,"score_gpt":0.2959268482043217,"score_spread":0.2036726342410571,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}