{"id":"W2413432810","doi":"10.1038/srep15435","title":"DNA methylation signatures of long intergenic noncoding RNAs in porcine adipose and muscle tissues","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Diabetes Canada; University of Toronto","funders":"Agricultural Science and Technology Innovation Program; National Key Research and Development Program of China; Chinese Academy of Sciences; National High-tech Research and Development Program; Yunnan Provincial Science and Technology Department; National Natural Science Foundation of China","keywords":"Biology; DNA methylation; Methylated DNA immunoprecipitation; Intergenic region; Gene; Methylation; Genetics; Differentially methylated regions; Exon; Epigenetics; Promoter; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001287174,0.00009455047,0.0001317085,0.0001835094,0.00004135944,0.00004491261,0.00008833047,0.0001184915,0.00001848228],"category_scores_gemma":[0.0003312654,0.00009218215,0.00004218587,0.000278371,0.0001134471,0.000009820971,0.0001568284,0.00009586471,0.000001308157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003073641,"about_ca_system_score_gemma":0.0001563185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005552261,"about_ca_topic_score_gemma":0.0002547738,"domain_scores_codex":[0.9986457,0.00006388094,0.0003120384,0.0004771548,0.0003084708,0.0001928116],"domain_scores_gemma":[0.9991328,0.000005502484,0.0001450714,0.0004146122,0.0001934046,0.0001085855],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002599687,0.00002506694,0.0002910745,0.00001613225,0.00001441188,0.00008796016,0.0001625024,0.0003193028,0.9909631,0.00001095392,0.001110822,0.006972649],"study_design_scores_gemma":[0.0002414362,0.0001024017,0.0006749738,0.00003905386,0.000008382151,0.00005379238,0.00007691416,0.0002253805,0.9887335,0.0005232192,0.00922058,0.0001004145],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899392,0.00496732,0.003129872,0.00006328194,0.00110402,0.000237096,0.000001824691,0.000007815963,0.0005496236],"genre_scores_gemma":[0.9983718,0.00004019348,0.0003881318,0.000008790991,0.00004631788,0.000007866209,0.00008414598,0.00001370517,0.001039045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008432657,"threshold_uncertainty_score":0.3759079,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01850885981954535,"score_gpt":0.2971897297175911,"score_spread":0.2786808698980457,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}