{"id":"W2413722165","doi":"10.1016/j.gene.2016.06.003","title":"A global study of transcriptome dynamics in canola (Brassica napus L.) responsive to Sclerotinia sclerotiorum infection using RNA-Seq","year":2016,"lang":"en","type":"article","venue":"Gene","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":70,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Sclerotinia sclerotiorum; Canola; Transcriptome; Sclerotinia; WRKY protein domain; Pathogen; Gene; Brassica; Host (biology); Jasmonate; Genetics; RNA-Seq; Virulence; Stem rot; Host–pathogen interaction; Microbiology; Gene expression; Botany; Arabidopsis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002079629,0.0001234048,0.0002011535,0.00003142251,0.00009274558,0.00001676354,0.0001340269,0.00007814868,0.00003096192],"category_scores_gemma":[0.00002843141,0.00004532169,0.00005209676,0.0006152357,0.00002054151,0.00006510717,0.00004184575,0.0000379449,0.000005426912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002134539,"about_ca_system_score_gemma":0.00001760928,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001522743,"about_ca_topic_score_gemma":0.08838246,"domain_scores_codex":[0.9988983,0.0001033397,0.0002442269,0.0002785303,0.0002008552,0.0002747115],"domain_scores_gemma":[0.9996737,0.00003169754,0.00007867375,0.00006427362,0.00006485893,0.00008681343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001353786,0.000174506,0.04213336,0.000002109225,0.000008751389,0.00001067211,0.00005116467,0.00002696408,0.9467006,0.00007634423,0.000009787329,0.01067038],"study_design_scores_gemma":[0.000630733,0.0008810002,0.969075,0.0001153477,0.00001765923,0.0000125183,0.0005498416,0.0001211506,0.02803857,0.0001781621,0.0001513335,0.0002287178],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984377,0.00001862219,0.0001558362,0.0003486444,0.0002220261,0.0004257727,0.0003073202,0.0000253148,0.00005873333],"genre_scores_gemma":[0.9996432,0.00001373548,0.000148963,0.00004718989,0.00005490813,0.00001414285,0.000005202301,0.000001052989,0.0000715916],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9269416,"threshold_uncertainty_score":0.9282522,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0260317234786396,"score_gpt":0.2371465073978804,"score_spread":0.2111147839192408,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}