{"id":"W2414242907","doi":"10.1007/978-1-62703-487-6_6","title":"Molecular Dynamics Simulations of Membrane Proteins","year":2013,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Molecular dynamics; Microsecond; Biological system; Computer science; Dynamics (music); Statistical physics; Chemistry; Physics; Biology; Computational chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003388094,0.0002475782,0.0003625722,0.0001646996,0.00003040246,0.00001065651,0.0003460243,0.0004010304,0.0001087292],"category_scores_gemma":[0.0003355224,0.0002285738,0.0001617996,0.0002711953,0.0002041821,0.000004810127,0.0001764716,0.0001848221,0.000004695572],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000281984,"about_ca_system_score_gemma":0.0001025137,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001289325,"about_ca_topic_score_gemma":0.0000398799,"domain_scores_codex":[0.9979351,0.0006461903,0.0004680148,0.0004870323,0.00009187766,0.0003717757],"domain_scores_gemma":[0.9989443,0.00004147088,0.0001479587,0.0006372029,0.000147192,0.00008191331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001622152,0.00006872677,0.001872963,0.0000264175,0.00004026437,0.000004279519,0.00002159142,0.000651131,0.9881578,0.002072275,0.000003644228,0.007064675],"study_design_scores_gemma":[0.0005193759,0.0002142383,0.0005102048,0.000009738844,0.00002821583,0.00001278145,0.00002434058,0.0009397996,0.9950355,0.001776342,0.0006807172,0.0002487336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5844694,0.000126864,0.4139055,0.00011306,0.0001379411,0.000531399,0.00002423309,0.00001096173,0.0006806165],"genre_scores_gemma":[0.6442055,0.00001114119,0.3551498,0.0002104997,0.00003651699,0.00008019259,0.0001834012,0.00003079773,0.00009216319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0597361,"threshold_uncertainty_score":0.9320968,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0118471453160056,"score_gpt":0.3500516168829164,"score_spread":0.3382044715669108,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}