{"id":"W2414289123","doi":"10.1186/s13059-016-0985-1","title":"The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence","year":2016,"lang":"en","type":"article","venue":"Genome biology","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":188,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council; European Cooperation in Science and Technology; Sight Research UK; Wellcome Trust; Wellcome","keywords":"Biology; Parasitism; Nematode; Globodera pallida; Virulence; Globodera rostochiensis; Potato cyst nematode; Genome; Genetics; Human genetics; Evolutionary biology; Gene; Solanaceae; Ecology; Host (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002219469,0.000120052,0.0002125573,0.000008700084,0.0004366507,0.00001692967,0.0004203083,0.00005516097,0.00002981016],"category_scores_gemma":[0.00004493856,0.00002498552,0.0000710843,0.0002040568,0.000608904,0.00004188826,0.0003302809,0.00004042813,0.000008870642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007918521,"about_ca_system_score_gemma":0.000004315457,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005982689,"about_ca_topic_score_gemma":0.0002100476,"domain_scores_codex":[0.9990381,0.000176218,0.0002960819,0.0002083899,0.00009612973,0.0001851024],"domain_scores_gemma":[0.9991679,0.0003380841,0.0002471462,0.0001435509,0.00007729787,0.00002602818],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000199515,0.0000116497,0.01236963,0.00000913699,0.00004562358,3.856255e-7,0.0004656349,2.579087e-7,0.9720731,0.005886053,0.00004113946,0.009077459],"study_design_scores_gemma":[0.0001369722,0.0001178724,0.9406574,0.00002680334,0.0000246849,0.00000418302,0.0004937851,0.000001734055,0.003744187,0.006031722,0.04863428,0.0001263667],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896557,0.002361543,0.00001735278,0.007245118,0.0001026707,0.0002670676,0.00003126422,0.00001075675,0.00030856],"genre_scores_gemma":[0.9964721,0.002694962,0.000009387802,0.000357576,0.00006388548,0.00002188394,0.000006000903,9.98084e-7,0.0003732172],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9683289,"threshold_uncertainty_score":0.3358408,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009494869343164455,"score_gpt":0.205268444877462,"score_spread":0.1957735755342975,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}