{"id":"W2414348877","doi":"10.1097/qad.0000000000000692","title":"Association between gp120 envelope V1V2 and V4V5 variable loop profiles in a defined HIV-1 transmission cluster","year":2015,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Rijksinstituut voor Volksgezondheid en Milieu; Stichting Sanquin Bloedvoorziening; Universiteit van Amsterdam","keywords":"Seroconversion; V3 loop; Biology; Transmission (telecommunications); Virology; Chronic infection; Viral load; Antibody; Virus; Amino acid; Human immunodeficiency virus (HIV); Cluster (spacecraft); Immunology; Genetics; Epitope; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003833137,0.0002002501,0.0002041558,0.0008697743,0.0004089064,0.0005730343,0.0002865897,0.0003840646,0.001354913],"category_scores_gemma":[0.001305428,0.0001612654,0.0001953885,0.0004203491,0.0003034874,0.0003219665,0.0004076182,0.0002771085,0.0002130809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000250213,"about_ca_system_score_gemma":0.0001938906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001765499,"about_ca_topic_score_gemma":0.001416448,"domain_scores_codex":[0.9996725,0.00006153683,0.00003340286,0.00009839937,0.00005006727,0.00008417964],"domain_scores_gemma":[0.9990554,0.0001542202,0.0004565229,0.00006307715,0.0001178243,0.0001530062],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004911903,0.00003738905,0.9863678,0.00001250969,0.00003556983,0.0001899678,0.0004486538,0.0001139198,0.01029026,0.00005911749,0.00006216292,0.00189142],"study_design_scores_gemma":[0.000007621565,0.0001542077,0.997532,0.000005726549,0.00001272591,0.0008470114,0.0003579626,0.0003375205,0.000619909,0.00003373672,0.00008765832,0.000003947983],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997868,0.00003615556,0.00005751709,0.000004069211,3.95068e-7,0.000002952458,0.00002935784,0.000001698509,0.0000810967],"genre_scores_gemma":[0.9996817,0.00001636473,0.000105974,0.000004386392,0.00000203987,0.000003703006,0.0001248252,0.000002191138,0.00005871402],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001765499,"threshold_uncertainty_score":0.004532576,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02049823115493172,"score_gpt":0.2565962542429262,"score_spread":0.2360980230879945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}