{"id":"W2414569285","doi":"10.1007/978-1-59745-514-5_11","title":"Organizing and Updating Whole Genome BLAST Searches with ReHAB","year":2007,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Genome; Similarity (geometry); Computer science; Genomics; Sequence (biology); Data mining; Software; Multiple sequence alignment; Resource (disambiguation); Sequence alignment; Information retrieval; Computational biology; Biology; Artificial intelligence; Genetics; Gene; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008222178,0.002517114,0.002847187,0.008456763,0.001414241,0.003557242,0.004727452,0.000945751,0.01610476],"category_scores_gemma":[0.02240185,0.002299485,0.001680027,0.007843511,0.000547025,0.004031674,0.003243585,0.00251078,0.01371722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006484662,"about_ca_system_score_gemma":0.00166748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002215914,"about_ca_topic_score_gemma":0.003447185,"domain_scores_codex":[0.9960569,0.001092139,0.000799125,0.0007648468,0.001031724,0.0002552969],"domain_scores_gemma":[0.9913865,0.003024654,0.0006075497,0.00258981,0.002038233,0.0003532797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004671963,0.0006803513,0.01112817,0.003153429,0.0007643357,0.001739813,0.002626447,0.004746545,0.1131513,0.005112335,0.1883592,0.6638661],"study_design_scores_gemma":[0.001805338,0.0009147237,0.02470661,0.0006935285,0.0009077866,0.00435626,0.002091672,0.1601594,0.291058,0.02469699,0.4873498,0.001259868],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.0676047,0.002149655,0.4829332,0.0007455405,0.0008309225,0.001002052,0.0320325,0.4020182,0.01068335],"genre_scores_gemma":[0.07828437,0.001288268,0.8144574,0.0003703978,0.0001896945,0.001176214,0.06268933,0.0362964,0.005247938],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01610476,"threshold_uncertainty_score":0.0538758,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01876081095936315,"score_gpt":0.3396502472826013,"score_spread":0.3208894363232382,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}