{"id":"W2415166553","doi":"10.1021/acs.jproteome.5b00262","title":"Tracking the Dynamic Relationship between Cellular Systems and Extracellular Subproteomes in <i><i>Pseudomonas aeruginosa</i></i> Biofilms","year":2015,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Guelph","funders":"Canada Foundation for Innovation; Cystic Fibrosis Canada","keywords":"Periplasmic space; Biofilm; Bacterial outer membrane; Pseudomonas aeruginosa; Biology; Proteome; Biogenesis; Microbiology; Pyocyanin; Bacteria; Cell biology; Viable but nonculturable; Biochemistry; Escherichia coli; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001950598,0.0002432753,0.000237589,0.0004653135,0.0003002489,0.0007594589,0.0001808635,0.0003573915,0.0005547038],"category_scores_gemma":[0.0003114607,0.0002041856,0.0002335526,0.0004425436,0.0001885785,0.0005262432,0.0005520559,0.0007094601,0.000277036],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000339617,"about_ca_system_score_gemma":0.000230336,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001745493,"about_ca_topic_score_gemma":0.00220115,"domain_scores_codex":[0.9998478,0.00001266977,0.000007846377,0.00004757161,0.00004566865,0.00003847374],"domain_scores_gemma":[0.9998375,0.00003599854,0.0000462813,0.000009892085,0.00004003114,0.00003023594],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004889566,0.00001039098,0.002407961,0.00003748081,0.000007308749,0.00002763886,0.00006668735,0.00006991642,0.9956859,0.00005561707,0.00005953931,0.001522652],"study_design_scores_gemma":[0.000009339557,0.0001916394,0.3153354,0.00003635891,0.00004774355,0.000433412,0.0006376372,0.006886949,0.6721148,0.0004053494,0.003853367,0.00004782972],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921179,0.0007810394,0.004527147,0.0001079619,0.00001044498,0.00002488506,0.001259181,0.00007189601,0.00109951],"genre_scores_gemma":[0.9848747,0.001364131,0.009331655,0.0001854642,0.00001481127,0.0001312665,0.002368836,0.00007233124,0.001656858],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001745493,"threshold_uncertainty_score":0.003470719,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09560401790612376,"score_gpt":0.3427133725732367,"score_spread":0.2471093546671129,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}