{"id":"W2415166553","doi":"10.1021/acs.jproteome.5b00262","title":"Tracking the Dynamic Relationship between Cellular Systems and Extracellular Subproteomes in <i><i>Pseudomonas aeruginosa</i></i> Biofilms","year":2015,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Guelph","funders":"Canada Foundation for Innovation; Cystic Fibrosis Canada","keywords":"Periplasmic space; Biofilm; Bacterial outer membrane; Pseudomonas aeruginosa; Biology; Proteome; Biogenesis; Microbiology; Pyocyanin; Bacteria; Cell biology; Viable but nonculturable; Biochemistry; Escherichia coli; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006562256,0.0001578619,0.0002777788,0.0002631821,0.0001729579,0.0001965564,0.0003176274,0.0002435471,0.000001672537],"category_scores_gemma":[0.0008289366,0.0001100596,0.0000804201,0.0003796213,0.0002448312,0.00002911102,0.0001485915,0.000794034,0.000005055949],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006703888,"about_ca_system_score_gemma":0.0002899228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001023956,"about_ca_topic_score_gemma":0.00001841586,"domain_scores_codex":[0.9972963,0.0008010369,0.0005875953,0.0002478102,0.0006113298,0.0004559397],"domain_scores_gemma":[0.9986033,0.0001590194,0.0002529042,0.000302518,0.0004638148,0.0002184884],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001307221,0.00002911381,0.0392377,0.00004924897,0.00002406926,0.00004825928,0.000160284,0.00003114262,0.9596595,0.00007425078,0.0001072474,0.0004484136],"study_design_scores_gemma":[0.005505857,0.003322317,0.1213536,0.0008767418,0.00008517492,0.001097493,0.00443781,0.0007611826,0.8386409,0.00110867,0.02182765,0.0009826211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891459,0.00860909,0.0002919633,0.001102053,0.0001683704,0.0005992892,0.000005380179,0.000003674959,0.00007425983],"genre_scores_gemma":[0.9982918,0.0001492696,0.0007231978,0.000008059264,0.0005187039,0.00001193868,0.00001000447,0.00002725706,0.0002597811],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1210187,"threshold_uncertainty_score":0.4488099,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09560401790612376,"score_gpt":0.3427133725732367,"score_spread":0.2471093546671129,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}