{"id":"W2415602872","doi":"10.1097/mib.0000000000000776","title":"Mucosa-Associated Ileal Microbiota in New-Onset Pediatric Crohnʼs Disease","year":2016,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agricultural Research Institute of Ontario; University of Ottawa; Hospital for Sick Children; Children's Hospital of Eastern Ontario; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Faecalibacterium prausnitzii; Dysbiosis; Microbiome; Crohn's disease; Pathogenesis; Inflammatory bowel disease; Biology; Disease; Ileitis; Intestinal mucosa; Biopsy; Gut flora; Immunology; Microbiology; Medicine; Pathology; Internal medicine; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00011951,0.0002987139,0.0002110526,0.0001454164,0.0001026494,0.00003745874,0.0003201099,0.0001887425,0.0001879017],"category_scores_gemma":[0.0003005877,0.0002457247,0.0001823261,0.0001331908,0.00008192944,0.00001534545,0.0001633995,0.00009135683,0.0001804744],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008821121,"about_ca_system_score_gemma":0.001225244,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003546443,"about_ca_topic_score_gemma":0.0003135797,"domain_scores_codex":[0.9981182,0.0001423776,0.0004199979,0.0005711248,0.0001419682,0.0006063746],"domain_scores_gemma":[0.99859,0.0000357024,0.0001557492,0.0005157491,0.00007029274,0.0006325417],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003701183,0.0002048658,0.8826162,0.00006372909,0.00002513922,0.00006839536,0.0000218892,0.000003952386,0.06000322,0.00002801162,0.05635843,0.0002360342],"study_design_scores_gemma":[0.001819358,0.0000607697,0.9858145,0.0000567041,0.00004916435,0.000003801385,0.00001134523,0.000002148012,0.0006033658,0.0001070093,0.01109181,0.000379992],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960281,0.001798844,0.00002499197,0.0005502557,0.0002489232,0.0003352386,0.000893424,0.00005676219,0.0000634208],"genre_scores_gemma":[0.9959739,0.0006454235,0.00002279442,0.0006017075,0.0004553467,0.00002443471,0.0003238088,0.00004925512,0.001903338],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1031983,"threshold_uncertainty_score":0.9999995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00665345129719919,"score_gpt":0.2319032195028076,"score_spread":0.2252497682056084,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}