{"id":"W2415602872","doi":"10.1097/mib.0000000000000776","title":"Mucosa-Associated Ileal Microbiota in New-Onset Pediatric Crohnʼs Disease","year":2016,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agricultural Research Institute of Ontario; University of Ottawa; Hospital for Sick Children; Children's Hospital of Eastern Ontario; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Faecalibacterium prausnitzii; Dysbiosis; Microbiome; Crohn's disease; Pathogenesis; Inflammatory bowel disease; Biology; Disease; Ileitis; Intestinal mucosa; Biopsy; Gut flora; Immunology; Microbiology; Medicine; Pathology; Internal medicine; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002173808,0.0002870286,0.0003279208,0.0009362551,0.0003361846,0.000427367,0.0001338201,0.0002512081,0.0007857838],"category_scores_gemma":[0.0006352267,0.0001318025,0.0001831356,0.0006883059,0.0003382647,0.0002770796,0.0004412266,0.0002784695,0.0001096317],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002855964,"about_ca_system_score_gemma":0.0001804461,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001177204,"about_ca_topic_score_gemma":0.001516811,"domain_scores_codex":[0.9997966,0.00003305763,0.00002034245,0.0000648595,0.00004583058,0.00003923217],"domain_scores_gemma":[0.9995547,0.00005177931,0.0002486168,0.00001444126,0.00004005352,0.00009045737],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003676621,0.00003860994,0.9758369,0.00008695684,0.00003198558,0.0009912328,0.0003257389,0.00005579389,0.01453581,0.00002893638,0.00006654832,0.007633873],"study_design_scores_gemma":[0.000003381034,0.0001030482,0.9963353,0.0000146534,0.00002080921,0.002231822,0.0002225543,0.00006482985,0.0007094739,0.00001915601,0.0002730025,0.000001969127],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983903,0.001196603,0.0001009422,0.0000205227,0.00000373256,0.000005018117,0.00008988275,0.000002945866,0.0001901599],"genre_scores_gemma":[0.9987287,0.0006371228,0.0004027222,0.0000162269,0.000007546045,0.000004656251,0.0001388418,0.000002007574,0.00006211136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001177204,"threshold_uncertainty_score":0.002628744,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00665345129719919,"score_gpt":0.2319032195028076,"score_spread":0.2252497682056084,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}