{"id":"W2415860606","doi":"10.3835/plantgenome2015.07.0062","title":"The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly","year":2016,"lang":"en","type":"article","venue":"The Plant Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":206,"is_retracted":false,"has_abstract":true,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Brigham Young University; U.S. Department of Agriculture; National Science Foundation","keywords":"Amaranthus hypochondriacus; Biology; Genome; Sequence assembly; Amaranth; Amaranthus cruentus; Genetics; Reference genome; Contig; Genome size; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002342434,0.0001500494,0.0001424164,0.000005837656,0.0007054509,0.00009049304,0.0004073964,0.00004364008,0.0001681393],"category_scores_gemma":[0.00001414089,0.00003202423,0.00007932416,0.0001295945,0.0001607114,0.00004887476,0.00007679327,0.00008134594,0.0002236369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001696653,"about_ca_system_score_gemma":0.000008566268,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003848261,"about_ca_topic_score_gemma":0.0001943989,"domain_scores_codex":[0.9989719,0.00008783926,0.0001599596,0.0002432688,0.0001842473,0.0003527248],"domain_scores_gemma":[0.9991918,0.0005232999,0.00005625782,0.0001077687,0.00002545525,0.00009538294],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002286561,0.00003268149,0.0001041939,0.000001947478,0.00002778327,0.000002253398,0.0003681393,0.000001056178,0.9931462,0.001216561,0.00005248612,0.005023843],"study_design_scores_gemma":[0.0002676202,0.0002833325,0.4565713,0.00001156359,0.00005339476,0.00005527763,0.0002784714,0.00003660471,0.0009382935,0.002868331,0.5383171,0.0003187804],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9831311,0.0008078911,0.000009811563,0.01401422,0.0001108582,0.0002458738,0.0006396269,0.00004384544,0.000996784],"genre_scores_gemma":[0.9964811,0.0005732208,0.00001016702,0.0001876359,0.0006415002,0.00002644007,0.00003509644,0.000001563151,0.002043299],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9922079,"threshold_uncertainty_score":0.5425829,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01645921908090586,"score_gpt":0.1953311941079656,"score_spread":0.1788719750270597,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}