{"id":"W2415860606","doi":"10.3835/plantgenome2015.07.0062","title":"The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly","year":2016,"lang":"en","type":"article","venue":"The Plant Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":206,"is_retracted":false,"has_abstract":true,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Brigham Young University; U.S. Department of Agriculture; National Science Foundation","keywords":"Amaranthus hypochondriacus; Biology; Genome; Sequence assembly; Amaranth; Amaranthus cruentus; Genetics; Reference genome; Contig; Genome size; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002655534,0.000991897,0.0005604877,0.001249544,0.0006587825,0.0006507762,0.0004872994,0.0003853572,0.001786828],"category_scores_gemma":[0.0006038558,0.0004264615,0.0007281541,0.001483667,0.0001312161,0.0004469651,0.0006302765,0.0007638824,0.001644748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005319995,"about_ca_system_score_gemma":0.0009965198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00353354,"about_ca_topic_score_gemma":0.004095631,"domain_scores_codex":[0.9997707,0.0000303021,0.00001892337,0.0000781089,0.00007069948,0.00003122478],"domain_scores_gemma":[0.9997917,0.00003168547,0.00004902598,0.00002356498,0.00007112093,0.00003294872],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007034124,0.00009735808,0.004447993,0.001201475,0.0001304875,0.0006895013,0.0003916771,0.002724695,0.9179292,0.001118178,0.01006091,0.0605052],"study_design_scores_gemma":[0.0004501567,0.0007756799,0.2551987,0.0003954852,0.001039226,0.004925511,0.000658283,0.03750927,0.3633386,0.004760669,0.3306141,0.0003342697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4717551,0.01014444,0.1989619,0.001786865,0.0003974952,0.001010962,0.291749,0.01470595,0.009488367],"genre_scores_gemma":[0.25582,0.004669443,0.2721716,0.0002628949,0.0001938536,0.0007262707,0.4593291,0.001946799,0.004880001],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00353354,"threshold_uncertainty_score":0.007025957,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01645921908090586,"score_gpt":0.1953311941079656,"score_spread":0.1788719750270597,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}