{"id":"W2415911133","doi":"10.1038/srep14145","title":"Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Massey University; Biotechnology and Biological Sciences Research Council; University of Aberdeen; Food Standards Agency","keywords":"Biology; Host (biology); Genotype; Genetics; Escherichia coli; Genome; Whole genome sequencing; Genetic variation; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002812707,0.0001539598,0.0002089595,0.0001173615,0.0002174764,0.000149182,0.000159388,0.0001491576,0.00001046173],"category_scores_gemma":[0.001134813,0.0001446285,0.00009755328,0.0004041624,0.0002121317,0.00002283293,0.0001754823,0.0001043961,0.000007734554],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001200288,"about_ca_system_score_gemma":0.0005234523,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001314362,"about_ca_topic_score_gemma":0.0001017946,"domain_scores_codex":[0.9979476,0.0001310272,0.0003759522,0.0005597024,0.0006255197,0.0003601536],"domain_scores_gemma":[0.9980307,0.00002863166,0.000517763,0.0004963416,0.0007951751,0.0001314086],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001439877,0.00003631529,0.07226265,0.00002159174,0.00008763002,0.00001213893,0.0002827469,0.0001138938,0.9264058,0.00001175318,0.0007089672,0.00004205734],"study_design_scores_gemma":[0.0006071639,0.0003367398,0.2547072,0.00004688671,0.0001141825,0.00003267577,0.001340608,0.0004292357,0.704779,0.002700636,0.03431432,0.0005913849],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955976,0.001453175,0.0002830396,0.000116882,0.001047296,0.0003006408,0.00001204356,0.00002148472,0.001167845],"genre_scores_gemma":[0.9963825,0.00005098638,0.0013463,0.00001902574,0.00009394693,0.0000344258,0.0001528125,0.00001639344,0.001903581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2216269,"threshold_uncertainty_score":0.589778,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02041049304905216,"score_gpt":0.2571158353626948,"score_spread":0.2367053423136427,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}