{"id":"W2415911133","doi":"10.1038/srep14145","title":"Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Massey University; Biotechnology and Biological Sciences Research Council; University of Aberdeen; Food Standards Agency","keywords":"Biology; Host (biology); Genotype; Genetics; Escherichia coli; Genome; Whole genome sequencing; Genetic variation; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003473274,0.0001669376,0.0003141545,0.0005447062,0.0001674821,0.0003874392,0.0001241568,0.0002995866,0.001230744],"category_scores_gemma":[0.0007371542,0.0001281472,0.0001992285,0.001027869,0.0002229761,0.0001766405,0.0002733922,0.0002212415,0.000306667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001603774,"about_ca_system_score_gemma":0.000183942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003642516,"about_ca_topic_score_gemma":0.009797342,"domain_scores_codex":[0.9997315,0.00005826878,0.00001384215,0.00009579927,0.00006270847,0.00003797281],"domain_scores_gemma":[0.9994716,0.0001837701,0.0001634943,0.00005946924,0.00007344326,0.00004827199],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002881572,0.00007016562,0.4883788,0.0002313134,0.0003544394,0.0005148661,0.0008136292,0.000564946,0.4586312,0.0005738521,0.0007492724,0.0488294],"study_design_scores_gemma":[0.000003357329,0.00005787386,0.9942009,0.00001073521,0.00002927874,0.0003175613,0.0001836266,0.0001910059,0.002722008,0.0001888951,0.002088661,0.000006202813],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932655,0.0007191318,0.003120885,0.0000844337,0.000008686723,0.000006950598,0.000963029,0.0000221222,0.001809199],"genre_scores_gemma":[0.9958746,0.0005179974,0.001650892,0.0001002106,0.00000680713,0.000006897651,0.001134558,0.00001216386,0.0006959478],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003642516,"threshold_uncertainty_score":0.00724268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02041049304905216,"score_gpt":0.2571158353626948,"score_spread":0.2367053423136427,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}