{"id":"W2416766303","doi":"10.1016/j.dci.2016.05.021","title":"Transcriptome profiling of the antiviral immune response in Atlantic cod macrophages","year":2016,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"IRF7; IRF3; TLR3; Biology; Transcriptome; Molecular biology; STAT1; Immune system; MDA5; CXCL10; Interferon; Innate immune system; Gene expression; Chemokine; Gene; RNA; Immunology; Genetics; RNA interference; Toll-like receptor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003264956,0.0002875762,0.0005251773,0.0001899027,0.0001597316,0.000007941817,0.0005617312,0.0001745551,0.0002885055],"category_scores_gemma":[0.00004671338,0.0001673907,0.0001467725,0.0003457511,0.0008908964,0.000126376,0.0002649033,0.000233987,0.0005200465],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001395378,"about_ca_system_score_gemma":0.0001263682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004169577,"about_ca_topic_score_gemma":0.00003009558,"domain_scores_codex":[0.9977967,0.0007311965,0.0005877285,0.0003656574,0.00004663581,0.0004720854],"domain_scores_gemma":[0.9992746,0.0001857467,0.0002105512,0.0002568785,0.00006187722,0.00001042026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002720311,0.0001848862,0.02294659,0.00001065817,0.0003263806,0.000009094115,0.001851139,2.82986e-7,0.9698454,0.00145356,0.0003305218,0.0003211997],"study_design_scores_gemma":[0.002497049,0.0001027777,0.345576,0.0001102974,0.00002148486,0.00002871538,0.001243399,1.481225e-7,0.6454246,0.00004528989,0.004758024,0.0001922129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953741,0.002174522,0.00006704769,0.0004164086,0.000557382,0.0005873908,0.00005359773,0.00003953426,0.0007299758],"genre_scores_gemma":[0.996964,0.00005658546,0.000137466,0.00005254379,0.000005054102,0.00004252328,0.00006170476,0.00001417339,0.002665996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3244208,"threshold_uncertainty_score":0.6825995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01703224603218435,"score_gpt":0.2517408399847896,"score_spread":0.2347085939526053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}