{"id":"W2417812971","doi":"10.1186/s12863-016-0386-1","title":"Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle","year":2016,"lang":"en","type":"article","venue":"BMC Genetics","topic":"Reproductive Physiology in Livestock","field":"Agricultural and Biological Sciences","cited_by":185,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Louisiana Association of Broadcasters","keywords":"Biology; Genome-wide association study; Quantitative trait locus; Genetics; Lactation; Genetic association; Phenotype; Single-nucleotide polymorphism; Dairy cattle; Gene; Candidate gene; Genotype; Pregnancy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003181181,0.00008302221,0.0001066144,0.00001431259,0.00009210282,0.0000121018,0.00008814549,0.0000908742,0.00001403365],"category_scores_gemma":[0.0009341665,0.00003410834,0.00002685037,0.0001034752,0.00004470323,0.00005302669,0.00001944685,0.0000374638,0.00000851567],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001703045,"about_ca_system_score_gemma":0.00003698437,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003483131,"about_ca_topic_score_gemma":0.2130559,"domain_scores_codex":[0.9990653,0.00007749016,0.0001383654,0.0003654111,0.00006974345,0.0002836922],"domain_scores_gemma":[0.999503,0.0002041225,0.00006146932,0.00005900494,0.00008294831,0.00008946953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001602673,0.00001853134,0.6770251,0.000005610074,0.000003494724,5.216549e-8,0.00006531129,0.00001092706,0.3203532,0.000007638376,0.00009334704,0.002400763],"study_design_scores_gemma":[0.00008251554,0.0001637181,0.989011,0.000006269558,0.000004961177,3.570099e-7,0.00004715647,0.000002935368,0.007204583,0.001173776,0.002208403,0.00009425909],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967477,0.0002185962,0.000004257341,0.002286459,0.0001341464,0.000479056,0.00005269194,0.00001232635,0.00006481101],"genre_scores_gemma":[0.9985418,0.00002353719,0.0003099867,0.00004869307,0.0002302805,0.00005643579,0.00001461901,0.000001125063,0.0007735691],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3131486,"threshold_uncertainty_score":0.8013037,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03385760827146921,"score_gpt":0.2369516510604489,"score_spread":0.2030940427889797,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}