{"id":"W2417812971","doi":"10.1186/s12863-016-0386-1","title":"Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle","year":2016,"lang":"en","type":"article","venue":"BMC Genetics","topic":"Reproductive Physiology in Livestock","field":"Agricultural and Biological Sciences","cited_by":185,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Louisiana Association of Broadcasters","keywords":"Biology; Genome-wide association study; Quantitative trait locus; Genetics; Lactation; Genetic association; Phenotype; Single-nucleotide polymorphism; Dairy cattle; Gene; Candidate gene; Genotype; Pregnancy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007767314,0.0002984617,0.0004057499,0.0016243,0.001435847,0.0006667046,0.0007109512,0.0003550134,0.00284023],"category_scores_gemma":[0.0008862338,0.0001436233,0.0006637499,0.002548578,0.000564318,0.0001035545,0.0003741104,0.0004747144,0.0001018527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006282715,"about_ca_system_score_gemma":0.00535371,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9097947,"about_ca_topic_score_gemma":0.9540472,"domain_scores_codex":[0.9994426,0.00003889575,0.00001690435,0.000171158,0.0001719118,0.0001584289],"domain_scores_gemma":[0.9991997,0.0001905458,0.0001638497,0.00003989678,0.0002437415,0.0001623267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006312241,0.00003254888,0.9748508,0.00009479978,0.000705861,0.0003977026,0.0005239798,0.0004356219,0.01110804,0.00030186,0.001059267,0.009858294],"study_design_scores_gemma":[0.000007881211,0.000008900119,0.9990813,0.00000562186,0.00008277982,0.00004190383,0.00007726347,0.0001365476,0.00008625448,0.00001886669,0.0004490438,0.000003702967],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943288,0.001040116,0.0003265857,0.000173734,0.000009564705,0.00001037549,0.00282154,0.00002302046,0.001266336],"genre_scores_gemma":[0.9964814,0.000376401,0.0006665374,0.00005973066,0.000005892523,0.00001080546,0.001489847,0.00001220928,0.0008970529],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09020525,"threshold_uncertainty_score":0.181473,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03385760827146921,"score_gpt":0.2369516510604489,"score_spread":0.2030940427889797,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}