{"id":"W2419207896","doi":"10.1007/978-1-59745-170-3_30","title":"Virus Evolution as a Tool to Study HIV-1 Biology","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Replication (statistics); Viral replication; Genome; Viral evolution; Computational biology; Virus; Virology; Sequence (biology); Genetics; Human immunodeficiency virus (HIV); Mechanism (biology); Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009447082,0.0003227945,0.0006416793,0.0008348604,0.000514555,0.0007493476,0.0006004769,0.0007480725,0.0009109193],"category_scores_gemma":[0.0007521943,0.0003162617,0.0003646928,0.0005883603,0.001111561,0.0008296671,0.0009558089,0.002441456,0.0005676711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006042548,"about_ca_system_score_gemma":0.0003014602,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002157245,"about_ca_topic_score_gemma":0.0002263651,"domain_scores_codex":[0.9992687,0.00032402,0.00003621552,0.0001150427,0.0002236647,0.00003229718],"domain_scores_gemma":[0.9996992,0.0001481512,0.00003946121,0.00006966641,0.00002435035,0.00001927331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001153671,0.0001211555,0.001057607,0.0006437732,0.00004034591,0.0001896799,0.0003150167,0.001618103,0.8368045,0.08578909,0.001073756,0.07223161],"study_design_scores_gemma":[0.00008802373,0.001219671,0.00266332,0.000228705,0.00008115717,0.002296788,0.0001333185,0.01362963,0.7645783,0.0317045,0.1832673,0.0001092884],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1802553,0.0726608,0.7247732,0.002446062,0.001221923,0.0006630489,0.0006646317,0.0008982374,0.01641667],"genre_scores_gemma":[0.3800308,0.03935119,0.5674461,0.0007654813,0.0003212088,0.001238124,0.0004770927,0.0002201413,0.01014995],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.0009447082,"threshold_uncertainty_score":0.004996121,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02367207102759272,"score_gpt":0.4180793749424663,"score_spread":0.3944073039148736,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}