{"id":"W2427157253","doi":"10.1007/978-1-61779-612-8_19","title":"Genome-Wide Methylation Analysis","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Methylation; DNA methylation; Biology; Genome; Illumina Methylation Assay; Genetics; Computational biology; Methyltransferase; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005418236,0.0003978812,0.0005878749,0.0014812,0.0004515893,0.0006105391,0.0004100708,0.0005003551,0.004812387],"category_scores_gemma":[0.0006492912,0.0001987532,0.0007594057,0.001337141,0.0001618971,0.0001934215,0.0004167856,0.0008465511,0.002016019],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003274638,"about_ca_system_score_gemma":0.0004685163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002697145,"about_ca_topic_score_gemma":0.006588588,"domain_scores_codex":[0.9993843,0.00006945928,0.00002255073,0.0002472924,0.0002111085,0.00006533682],"domain_scores_gemma":[0.9998291,0.00003460302,0.00002516633,0.0000254877,0.0000660931,0.00001953248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003000863,0.00005052775,0.01955567,0.0005015518,0.0004645932,0.0002852876,0.0001977662,0.001110679,0.8570588,0.001226372,0.005414027,0.1138347],"study_design_scores_gemma":[0.00006281179,0.0004930241,0.2476393,0.0001049909,0.0007264042,0.002673111,0.0002191915,0.006905853,0.5799378,0.00220108,0.1589326,0.0001038343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5270139,0.0257011,0.2659543,0.001518739,0.0004256913,0.001332606,0.1160276,0.005916059,0.05611004],"genre_scores_gemma":[0.6789852,0.01483471,0.1857248,0.001380469,0.0001181264,0.001337701,0.07950225,0.0006944013,0.03742243],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.004812387,"threshold_uncertainty_score":0.01609904,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02131582096190431,"score_gpt":0.3819365369989912,"score_spread":0.3606207160370868,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}