{"id":"W2429320060","doi":"10.1385/1-59259-775-0:315","title":"Methods for Analysis of Mitochondrial tRNA Editing in Acanthamoeba castellanii","year":2004,"lang":"en","type":"article","venue":"Humana Press eBooks","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Canada Research Chairs","keywords":"Transfer RNA; Biology; Computational biology; Genetics; Gene; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002133466,0.0001316932,0.000309223,0.0001675877,0.00004638245,0.00001107626,0.000158309,0.0001838376,0.0000192497],"category_scores_gemma":[0.0001319443,0.0001322583,0.0002190038,0.00004993319,0.00006678139,0.000001765066,0.00006056556,0.00007821785,4.586166e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001261995,"about_ca_system_score_gemma":0.00003808242,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002516751,"about_ca_topic_score_gemma":0.0008129162,"domain_scores_codex":[0.9989226,0.0001165892,0.0003396808,0.0003388168,0.00006651464,0.0002157729],"domain_scores_gemma":[0.9993938,0.00003840072,0.0001428167,0.0003045468,0.00007027662,0.00005021499],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004347446,0.00006420286,0.00006153755,0.00004797806,0.0005390173,0.000005003258,0.0005606399,0.002433768,0.9689589,0.006761442,0.0003922672,0.01974046],"study_design_scores_gemma":[0.003099306,0.0004720259,0.0001922865,0.00002193719,0.0005804573,0.000008018064,0.0001064789,0.0003493648,0.8416329,0.0005573743,0.1526669,0.0003129333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.319073,0.003001146,0.6305552,0.00005537464,0.004001545,0.001780859,0.0001846633,0.0000489896,0.04129928],"genre_scores_gemma":[0.7026146,0.0002300769,0.2796483,0.0007189313,0.004995801,0.0005546422,0.0008498657,0.0001418277,0.01024594],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.3835416,"threshold_uncertainty_score":0.5393339,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06447179541320432,"score_gpt":0.3651239842621764,"score_spread":0.3006521888489721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}