{"id":"W2430375189","doi":"10.1111/1755-0998.12555","title":"De novo assembly of a tadpole shrimp (<i>Triops newberryi</i>) transcriptome and preliminary differential gene expression analysis","year":2016,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Trent University","funders":"National Institute of General Medical Sciences","keywords":"Biology; Transcriptome; De novo transcriptome assembly; Gene; RNA-Seq; Genetics; Sequence assembly; Illumina dye sequencing; Housekeeping gene; Gene expression; Shrimp; Computational biology; Genome; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004687714,0.0008265943,0.000852012,0.0004918386,0.0006413525,0.0009752171,0.0004428911,0.0004096891,0.001552248],"category_scores_gemma":[0.001074981,0.0005373539,0.001201171,0.0006420029,0.0002389257,0.0005169957,0.0006546651,0.001368361,0.001286424],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003508136,"about_ca_system_score_gemma":0.0006351207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001597426,"about_ca_topic_score_gemma":0.003230795,"domain_scores_codex":[0.9997707,0.0000221675,0.00002224624,0.00010444,0.00004616132,0.00003431007],"domain_scores_gemma":[0.9994931,0.0001234623,0.00008186115,0.0000721516,0.0001700725,0.00005936897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002165316,0.0000522509,0.00237088,0.0003395619,0.00006192509,0.00050377,0.0003385647,0.003101362,0.9813241,0.00045682,0.0006417266,0.01059251],"study_design_scores_gemma":[0.00009815409,0.0009048447,0.06735516,0.0001746323,0.0004157729,0.001057057,0.001032008,0.09540333,0.779722,0.002023692,0.05164887,0.0001644358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.767652,0.001179654,0.2063519,0.000324358,0.0002524216,0.0006500534,0.01730475,0.002146429,0.004138585],"genre_scores_gemma":[0.5540553,0.001712235,0.3723841,0.0003290549,0.00008255414,0.001214196,0.06138245,0.001472878,0.007367273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001597426,"threshold_uncertainty_score":0.005192816,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005085814423621374,"score_gpt":0.2117270586037631,"score_spread":0.2066412441801417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}