{"id":"W2437557520","doi":"10.1038/srep10773","title":"Burkholderia cenocepacia and Salmonella enterica ArnT proteins that transfer 4-amino-4-deoxy-l-arabinose to lipopolysaccharide share membrane topology and functional amino acids","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Trust","keywords":"Burkholderia cenocepacia; Periplasmic space; Biochemistry; Amino acid; Bacterial outer membrane; Biology; Topology (electrical circuits); Transamination; Membrane topology; Chemistry; Transmembrane domain; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001548974,0.000412831,0.0002172706,0.000187651,0.0002028511,0.0003760047,0.0001402004,0.0003003983,0.0004061626],"category_scores_gemma":[0.0003268528,0.0001227244,0.0002064231,0.0002399969,0.0002754973,0.0003247236,0.0003365237,0.000269949,0.0003247713],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000260771,"about_ca_system_score_gemma":0.000196438,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008901996,"about_ca_topic_score_gemma":0.001003012,"domain_scores_codex":[0.9998748,0.00002332905,0.000009059207,0.00002700785,0.00003919256,0.00002657263],"domain_scores_gemma":[0.999781,0.00001582418,0.0001045727,0.00001884718,0.00003050293,0.00004939249],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002138437,0.00001670179,0.002047043,0.00005000962,0.00001159292,0.0002368623,0.00006067073,0.0002917032,0.9928365,0.0004626689,0.000042499,0.003729928],"study_design_scores_gemma":[0.00005345635,0.0007979171,0.06591232,0.00001526036,0.00006355652,0.006339055,0.0003886116,0.004703042,0.9018916,0.0008484869,0.01894628,0.00004047225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912745,0.001130359,0.005956538,0.0000982304,0.00001610584,0.00002041915,0.0002653823,0.00007205603,0.001166453],"genre_scores_gemma":[0.9882659,0.0007659687,0.00789615,0.00005364547,0.000006960201,0.00002255058,0.0009999995,0.00001042847,0.001978436],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008901996,"threshold_uncertainty_score":0.00189203,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02292524821402018,"score_gpt":0.2324457267299017,"score_spread":0.2095204785158815,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}