{"id":"W2438810925","doi":"10.1186/s13100-016-0067-7","title":"Distribution of the DNA transposon family, Pokey in the Daphnia pulex species complex","year":2016,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Guelph","keywords":"Daphnia pulex; Biology; Transposable element; Genetics; Ribosomal DNA; Lineage (genetic); Ribosomal RNA; Daphnia; Pulex; Genome; Phylogenetics; Evolutionary biology; Gene; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001568571,0.00009124298,0.00008704973,0.00001107417,0.00005011008,0.000006725224,0.0003013971,0.00007718389,0.00002857953],"category_scores_gemma":[0.00002252542,0.00004615997,0.0000899833,0.00009881454,0.0001714977,0.000001808494,0.0000410711,0.00004308102,0.000005805314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001588872,"about_ca_system_score_gemma":0.00002773805,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001812339,"about_ca_topic_score_gemma":0.0001727053,"domain_scores_codex":[0.999289,0.00009593398,0.0001724815,0.0001604967,0.0001281445,0.0001539253],"domain_scores_gemma":[0.9995058,0.00001496405,0.00005345964,0.0003691153,0.0000366951,0.00001996126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002622218,0.00007100032,0.0079453,0.000007331301,0.000008958889,3.575112e-7,0.0000747406,0.00005486248,0.986336,0.0007465068,0.003176988,0.001551722],"study_design_scores_gemma":[0.0005904979,0.000158097,0.7756557,0.00001977935,0.00001213568,0.000004537981,0.000258912,0.00008149533,0.06986228,0.0001884628,0.1530415,0.0001265741],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954556,0.0001636023,0.001936613,0.0005498448,0.0000846977,0.000241892,0.0002479549,0.000004652221,0.001315191],"genre_scores_gemma":[0.9986892,0.0001461422,0.00001912618,0.0001754183,0.00005794052,0.00002809825,0.0001591407,0.000006885911,0.0007180161],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9164737,"threshold_uncertainty_score":0.1882349,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01188421760840572,"score_gpt":0.2295487609979445,"score_spread":0.2176645433895388,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}