{"id":"W2440845102","doi":"10.1128/mbio.00667-16","title":"Viruses Infecting a Freshwater Filamentous Cyanobacterium ( <i>Nostoc</i> sp.) Encode a Functional CRISPR Array and a Proteobacterial DNA Polymerase B","year":2016,"lang":"en","type":"article","venue":"mBio","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; University of British Columbia","funders":"British Columbia Knowledge Development Fund; Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Nostoc; Cyanobacteria; CRISPR; Genome; Microbiology; Prophage; Gene; Horizontal gene transfer; Genetics; Lysogenic cycle; Plasmid; Bacteriophage; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009932095,0.0002222566,0.0001684055,0.00004118848,0.0002308894,0.0001352553,0.0001072751,0.00008899634,0.01364186],"category_scores_gemma":[0.00004537344,0.0001552795,0.00007667961,0.00008443979,0.0001826335,0.0005570967,0.0001791325,0.0001087773,0.0008861904],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001337307,"about_ca_system_score_gemma":0.00001480207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001068445,"about_ca_topic_score_gemma":0.001487733,"domain_scores_codex":[0.9987435,0.00005722316,0.0002538693,0.0004270308,0.0001349699,0.0003834035],"domain_scores_gemma":[0.999458,0.0000498057,0.000107551,0.0002225775,0.00001392987,0.0001480981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001041299,0.00009184876,0.006170343,0.000005138646,0.00001729433,0.000007416166,0.0001785157,3.096217e-7,0.987013,0.000003515402,0.002931084,0.003477408],"study_design_scores_gemma":[0.0007720647,0.0001274131,0.07746705,0.00005300288,0.00002309716,0.0001079596,0.00002665657,0.000001716923,0.7827946,0.0000367117,0.1382949,0.0002948085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957829,0.000008824595,0.0009358239,0.0006966601,0.0006830929,0.0003270092,0.000171958,0.00008290543,0.001310827],"genre_scores_gemma":[0.9961893,0.00001037829,0.0004880519,0.001187464,0.0003079013,0.00007972716,0.00001256265,0.00002725946,0.001697335],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2042184,"threshold_uncertainty_score":0.9998918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01151944908426131,"score_gpt":0.2162084540909535,"score_spread":0.2046890050066922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}