{"id":"W2460643803","doi":"10.1128/msystems.00032-15","title":"Identification of Novel Host Interactors of Effectors Secreted by <i>Salmonella</i> and <i>Citrobacter</i>","year":2016,"lang":"en","type":"article","venue":"mSystems","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Salmonella; Identification (biology); Effector; Host (biology); Citrobacter; Biology; Microbiology; Computational biology; Host factors; Enterobacteriaceae; Virology; Bacteria; Genetics; Escherichia coli; Cell biology; Gene; Virus; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003995209,0.0001325575,0.0003503475,0.00001479147,0.00003031458,0.00001010059,0.0001745022,0.0001162239,0.00002827273],"category_scores_gemma":[0.0001138498,0.0000438077,0.00007962558,0.0001531288,0.0001081382,0.00007699321,0.00004650846,0.0000408712,0.000005960085],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001498843,"about_ca_system_score_gemma":0.000002924799,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003403016,"about_ca_topic_score_gemma":0.00003531653,"domain_scores_codex":[0.9987455,0.0001415423,0.0005530375,0.0002615976,0.0001185196,0.0001798083],"domain_scores_gemma":[0.9986792,0.0006660104,0.0004285287,0.00008602233,0.00006775949,0.00007253337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002692985,0.00004058738,0.1309076,0.00002735992,0.00001699913,1.480557e-7,0.00003116337,6.566555e-8,0.8667057,0.00004044058,0.000430399,0.001772658],"study_design_scores_gemma":[0.0004899908,0.0003431276,0.326849,0.0001958406,0.00002652731,0.00001398086,0.0001292806,0.00003009385,0.6659302,0.00002525875,0.005743708,0.00022302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986748,0.0002594583,0.00007661507,0.000191523,0.0002596168,0.0001956507,0.0002164066,0.00002657266,0.00009936534],"genre_scores_gemma":[0.9996269,0.00005704599,0.000004403962,0.00003220084,0.00007056745,0.00001106296,0.00002638763,0.000001495856,0.0001699828],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2007755,"threshold_uncertainty_score":0.1786426,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01094977847212163,"score_gpt":0.2097565627491,"score_spread":0.1988067842769784,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}