{"id":"W2461121776","doi":"10.1128/aac.00726-16","title":"Molecular Epidemiology of a Vancomycin-Intermediate Heteroresistant Staphylococcus epidermidis Outbreak in a Neonatal Intensive Care Unit","year":2016,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal; McGill University Health Centre; Institut National de Santé Publique du Québec; University of Manitoba; Montreal Children's Hospital; McGill University","funders":"","keywords":"Pulsed-field gel electrophoresis; Etest; Outbreak; Neonatal intensive care unit; Staphylococcus epidermidis; Medicine; Intensive care; Vancomycin; Microbiology; Molecular epidemiology; Intensive care unit; Methicillin-resistant Staphylococcus aureus; Population; Staphylococcus aureus; Virology; Pediatrics; Intensive care medicine; Biology; Antibiotics; Genotype; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002189061,0.0004169066,0.001128927,0.0002809313,0.00005100842,0.0000070245,0.0002077204,0.0002381476,0.0001039976],"category_scores_gemma":[0.000266742,0.00029566,0.000290093,0.0002405355,0.0006232099,0.00009354861,0.0001103273,0.0002094361,0.00001123051],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001052458,"about_ca_system_score_gemma":0.0001111815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001973603,"about_ca_topic_score_gemma":0.0001593643,"domain_scores_codex":[0.997504,0.0001485776,0.0008860354,0.0006523407,0.0001551345,0.0006539084],"domain_scores_gemma":[0.9982767,0.0002248023,0.000357456,0.0004833407,0.0004587478,0.0001989264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002428656,0.000097536,0.8358222,0.0004027135,0.0002297295,0.0003823832,0.002377082,0.00000290171,0.133449,0.0001733867,0.002148394,0.02248607],"study_design_scores_gemma":[0.01236162,0.0006966363,0.8327569,0.002527047,0.0001137448,0.00008742063,0.001932134,0.0000197377,0.1343645,0.0003348899,0.0140884,0.0007169924],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939169,0.0005767353,0.000947442,0.003336417,0.0001589484,0.0007056762,0.0001837717,0.00003778008,0.0001362851],"genre_scores_gemma":[0.9857975,0.001661186,0.0004452134,0.01179883,0.00006070765,0.00001517217,0.00002828349,0.00006788396,0.0001252547],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02176907,"threshold_uncertainty_score":0.9999496,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02262201630008931,"score_gpt":0.3009477525338932,"score_spread":0.2783257362338039,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}