{"id":"W2461695554","doi":"10.1039/c6mb00239k","title":"Mastitomics, the integrated omics of bovine milk in an experimental model of <i>Streptococcus uberis</i> mastitis: 1. High abundance proteins, acute phase proteins and peptidomics","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of California, San Diego; Biotechnology and Biological Sciences Research Council; University of Glasgow; Zoetis; Scottish Government; Rural and Environment Science and Analytical Services Division; Wellcome Trust; McGill University; Wellcome","keywords":"Streptococcus uberis; Lactoferrin; Mastitis; Serum amyloid A; Acute-phase protein; Proteomics; Haptoglobin; Biology; Biomarker; Peptide; Microbiology; Immunology; Andrology; Biochemistry; Bacteria; Streptococcus; Inflammation; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003369426,0.0002286447,0.0003865549,0.00002629828,0.00007076873,0.00003310512,0.0004093238,0.0001452031,0.00002680655],"category_scores_gemma":[0.00004167031,0.00008520525,0.00008240079,0.0002063938,0.0002848782,0.0001504358,0.0001355806,0.0001066552,0.000001702723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004457845,"about_ca_system_score_gemma":0.00003323413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007488942,"about_ca_topic_score_gemma":0.0009208662,"domain_scores_codex":[0.9983248,0.0002014009,0.0005809171,0.0003902373,0.0002360618,0.0002666201],"domain_scores_gemma":[0.9992771,0.00004322176,0.0002884161,0.0002032869,0.00009769385,0.00009028359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002653144,0.0002813829,0.0004067988,0.0000371471,0.00002281097,0.000009161833,0.0001640641,0.00002304462,0.9946964,0.001587403,0.00003000686,0.002476505],"study_design_scores_gemma":[0.001409547,0.001043901,0.0001956717,0.0002939027,0.00001707285,0.000009644387,0.0004591388,0.002054111,0.9937329,0.0002584013,0.0002852833,0.0002404667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957166,0.0003596016,0.000977709,0.0003573107,0.00009066374,0.001353314,0.00108638,0.00002819811,0.00003027271],"genre_scores_gemma":[0.9987734,0.00007179481,0.0007615587,0.00006044413,0.0000527991,0.000153349,0.00006506224,0.000004370328,0.00005723419],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003056838,"threshold_uncertainty_score":0.347457,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01625143707704013,"score_gpt":0.242606737785758,"score_spread":0.2263553007087179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}