{"id":"W2462090486","doi":"10.1002/pmic.201500251","title":"<i>De novo</i> peptide sequencing using CID and HCD spectra pairs","year":2016,"lang":"en","type":"article","venue":"PROTEOMICS","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Electron-transfer dissociation; Chemistry; Spectral line; Mass spectrometry; Mass spectrum; Tandem mass spectrometry; Fragmentation (computing); Dissociation (chemistry); Peptide; Collision-induced dissociation; Analytical Chemistry (journal); Chromatography; Computer science; Physics; Biochemistry; Physical chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001513952,0.00124802,0.0008821527,0.001587863,0.0007155219,0.0008552904,0.00126381,0.0008915514,0.001559389],"category_scores_gemma":[0.00193093,0.0005443624,0.0009340103,0.001239584,0.0003930947,0.001422019,0.001419726,0.0008245305,0.001568575],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003985754,"about_ca_system_score_gemma":0.0005822467,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007406249,"about_ca_topic_score_gemma":0.00118852,"domain_scores_codex":[0.9986269,0.0001951003,0.0001458573,0.0005325986,0.000428658,0.00007089703],"domain_scores_gemma":[0.9986697,0.0002444752,0.0002572952,0.0003371812,0.0004217495,0.00006958983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005764371,0.0001310238,0.003913001,0.0004908897,0.00015651,0.0006534611,0.0001490831,0.005404905,0.6986091,0.002345484,0.002754614,0.2848156],"study_design_scores_gemma":[0.0000593091,0.000328426,0.009336917,0.00003677122,0.00009818852,0.003299227,0.00007926374,0.1423278,0.8237413,0.002739554,0.01780866,0.0001446938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04940368,0.0009353986,0.9436828,0.0001202964,0.0001450479,0.0003013961,0.0004526932,0.002864976,0.002093743],"genre_scores_gemma":[0.06592853,0.0002918549,0.9315211,0.0001239545,0.00003368094,0.0001034448,0.0009205058,0.0001311995,0.0009458176],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.001587863,"threshold_uncertainty_score":0.008006692,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02170294249319785,"score_gpt":0.2515967918297888,"score_spread":0.229893849336591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}