{"id":"W2464451609","doi":"10.1101/060921","title":"An improved genome assembly uncovers prolific tandem repeats in Atlantic cod","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Marine animal studies overview","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Norges Forskningsråd; Universitetet i Oslo; National Science Council; Norwegian Sequencing Centre; McGill University","keywords":"Genome; Sequence assembly; Tandem repeat; Whole genome sequencing; DNA sequencing; Structural variation; Gene; Hybrid genome assembly","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004276371,0.0004565606,0.0004485302,0.0005973214,0.0004042034,0.0007977707,0.0003454988,0.0004770901,0.00070957],"category_scores_gemma":[0.0007278905,0.0003436682,0.0007517859,0.0004722826,0.000181222,0.0002196128,0.000542693,0.0006181196,0.0005894399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004017732,"about_ca_system_score_gemma":0.0006172018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004539837,"about_ca_topic_score_gemma":0.006638701,"domain_scores_codex":[0.9997013,0.0000245722,0.00003124561,0.0001111686,0.00008346652,0.00004822115],"domain_scores_gemma":[0.9996029,0.0000748201,0.00009078271,0.00008488746,0.0001036432,0.00004303011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002302643,0.00004020052,0.01153604,0.0001422139,0.00005582391,0.0002384749,0.0001172496,0.0008816838,0.9688221,0.0001521815,0.0002749825,0.01750882],"study_design_scores_gemma":[0.00006564418,0.0004290613,0.2897155,0.00009632429,0.0005462116,0.00170558,0.0002682057,0.02795872,0.6575504,0.0003830193,0.02118719,0.00009414491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9724654,0.0007916487,0.02262124,0.0001221325,0.00006507389,0.00004169187,0.002268394,0.000401409,0.001223002],"genre_scores_gemma":[0.8998379,0.0006707397,0.07944833,0.0001737148,0.00005307741,0.00005939357,0.01571654,0.0004596138,0.003580591],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004539837,"threshold_uncertainty_score":0.009026825,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01304307195780701,"score_gpt":0.2199294304258403,"score_spread":0.2068863584680333,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}