{"id":"W2465274248","doi":"10.1016/j.ijid.2016.05.029","title":"Genotyping of Salmonella with lineage-specific genes: correlation with serotyping","year":2016,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Natural Science Foundation of China","keywords":"Serotype; Salmonella; Biology; Polyphyly; Genotyping; Typing; Phylogenetic tree; Genetics; Gene; Microbiology; Genotype; Bacteria; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001505065,0.0001134262,0.000210612,0.00004771867,0.00004619765,0.00002295246,0.0002145403,0.00004723823,0.0001897438],"category_scores_gemma":[0.00007428072,0.00003417041,0.0001004742,0.0001228058,0.00008879082,0.00020444,0.00002496195,0.00006502228,0.000007259966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005903024,"about_ca_system_score_gemma":0.00002706744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002788827,"about_ca_topic_score_gemma":0.00004344345,"domain_scores_codex":[0.9990004,0.00008477973,0.0003757588,0.0001322067,0.0002798502,0.0001270615],"domain_scores_gemma":[0.9981947,0.0004776661,0.0005736465,0.00003887813,0.000629658,0.00008547743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006616375,0.0001370926,0.8776127,0.000003350224,0.0001740456,0.00003547185,0.00003182456,0.0003984924,0.04879699,0.0002036393,0.0001017629,0.07184304],"study_design_scores_gemma":[0.001035452,0.001079558,0.9880621,0.0003637153,0.00005823699,0.0005377003,0.000113822,0.00003277414,0.004209905,0.0005049505,0.003813052,0.0001887016],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951272,0.0006732457,0.00321297,0.0003670297,0.0002986686,0.00006428896,0.00002423958,0.00001936444,0.0002129846],"genre_scores_gemma":[0.9986892,0.000494019,0.0001038743,0.00009230868,0.0005811577,0.000002474934,0.00000755779,0.000001917662,0.00002745058],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1104495,"threshold_uncertainty_score":0.2077562,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01145794888843235,"score_gpt":0.2178004909474688,"score_spread":0.2063425420590365,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}