{"id":"W2466307120","doi":"10.1371/journal.pone.0158747","title":"Marked Differences in Mucosal Immune Responses Induced in Ileal versus Jejunal Peyer’s Patches to Mycobacterium avium subsp. paratuberculosis Secreted Proteins following Targeted Enteric Infection in Young Calves","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Guelph","funders":"Agriculture and Agri-Food Canada; Canadian Institutes of Health Research; Beef Cattle Research Council","keywords":"Paratuberculosis; Ileum; Biology; Microbiology; Immune system; Jejunum; Mesenteric lymph nodes; Intestinal mucosa; Recombinant DNA; Immunoglobulin A; Pathogen; Antibody; Mycobacterium; Immunology; Virology; Immunoglobulin G; Bacteria; Medicine; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007595991,0.0003977033,0.0009251235,0.001223044,0.00006550681,0.00007423716,0.0001941533,0.0002847721,0.0002852665],"category_scores_gemma":[0.003185016,0.0003161261,0.0001638895,0.001289546,0.00005832714,0.000416337,0.0001702887,0.0005169927,0.0000669215],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006708609,"about_ca_system_score_gemma":0.0002772466,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008528945,"about_ca_topic_score_gemma":0.009321764,"domain_scores_codex":[0.9960616,0.000692821,0.0007951916,0.0006774018,0.000791221,0.0009817567],"domain_scores_gemma":[0.9982665,0.0006839021,0.0001216427,0.0004328546,0.0001213892,0.0003737733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006486423,0.001037342,0.5283689,0.0001034719,0.0001133491,0.0001127833,0.0004046623,3.384363e-8,0.4630997,0.000001400873,0.000005270488,0.0002666043],"study_design_scores_gemma":[0.006112436,0.001403067,0.8542022,0.001982766,0.00007116736,0.000003437563,0.0001416857,0.0000442207,0.1357073,0.000008991037,0.000003030748,0.0003196892],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960675,0.0001254505,0.000005530644,0.001447173,0.0002508367,0.001841803,0.00004932543,0.00009758915,0.0001148005],"genre_scores_gemma":[0.9977403,0.0003590663,0.000228848,0.00004507808,0.0001404964,0.001205358,0.00006808668,0.00005029821,0.0001624884],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3273923,"threshold_uncertainty_score":0.9999291,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06136099916805555,"score_gpt":0.2858042694186994,"score_spread":0.2244432702506439,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}