{"id":"W2466635549","doi":"10.1007/s10482-014-0344-8","title":"A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives","year":2014,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Clade; Type genus; Taxonomic rank; Evolutionary biology; Phylogenetics; Monophyly; Taxonomy (biology); Genome; Genetics; Zoology; Gene; Type species; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002197226,0.000795637,0.0007177762,0.003584783,0.001483541,0.002555317,0.001416583,0.0008736319,0.001791634],"category_scores_gemma":[0.002123825,0.0003201783,0.0007702568,0.00231413,0.001621314,0.002491923,0.001474274,0.002307665,0.001149088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001398073,"about_ca_system_score_gemma":0.001998489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002913281,"about_ca_topic_score_gemma":0.002816858,"domain_scores_codex":[0.9994034,0.0001793682,0.00007596985,0.0001751744,0.00009758471,0.00006848357],"domain_scores_gemma":[0.9990771,0.0001088288,0.0002198136,0.00008891254,0.0003321391,0.0001731226],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001021151,0.0006455191,0.08002505,0.002332921,0.0005956512,0.001531944,0.005940518,0.01289647,0.3032191,0.1013057,0.007631087,0.4828548],"study_design_scores_gemma":[0.0003233282,0.002084358,0.3450916,0.002226164,0.0009630928,0.004475324,0.01101535,0.1211467,0.02103773,0.2318057,0.2593114,0.0005193066],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2495396,0.0158901,0.7028683,0.01012896,0.001150413,0.0009847804,0.003549304,0.001385119,0.01450336],"genre_scores_gemma":[0.3916152,0.006902456,0.5897179,0.001707246,0.000266225,0.000686308,0.005486724,0.0002514049,0.003366635],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003584783,"threshold_uncertainty_score":0.01162016,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01372702910278505,"score_gpt":0.2396494354143338,"score_spread":0.2259224063115487,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}