{"id":"W2467728588","doi":"10.1093/bioinformatics/btw382","title":"ChAsE: chromatin analysis and exploration tool","year":2016,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency; Canada's Michael Smith Genome Sciences Centre; Simon Fraser University; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Chromatin; Computer science; Computational biology; Biology; Genetics; DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002123121,0.002043536,0.001386391,0.00236211,0.0009780956,0.001752661,0.003025349,0.001323128,0.06685667],"category_scores_gemma":[0.00347683,0.001416439,0.001243258,0.001434702,0.0004216648,0.001812472,0.003482625,0.002624763,0.03275677],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004132495,"about_ca_system_score_gemma":0.001200278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001899895,"about_ca_topic_score_gemma":0.003108438,"domain_scores_codex":[0.9992855,0.0001054731,0.00005851213,0.0001692081,0.0002965512,0.00008479021],"domain_scores_gemma":[0.998741,0.0006140565,0.00007938574,0.0001904904,0.0002065218,0.0001685035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001218049,0.0002353037,0.004270057,0.002382071,0.0003610471,0.0009164581,0.0006093834,0.00483129,0.05968222,0.005599776,0.745672,0.1742223],"study_design_scores_gemma":[0.001144659,0.0002611249,0.009404792,0.0005287338,0.0001655328,0.001998357,0.0002175016,0.08694817,0.1064561,0.01849798,0.773843,0.0005340524],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.0042276,0.0008020242,0.3914509,0.0003875659,0.000262329,0.0004591779,0.0437235,0.5543835,0.004303377],"genre_scores_gemma":[0.05247347,0.001481454,0.6185928,0.001867272,0.0003176237,0.004560007,0.1520724,0.1485126,0.02012235],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.06685667,"threshold_uncertainty_score":0.2236579,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007374422358469707,"score_gpt":0.2143001800496196,"score_spread":0.2069257576911499,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}